Recent changes to Developers.Variables.scan_1D

Developers.Variables.scan_1D modified by Burkhard Schmidt

Burkhard Schmidt — Fri, 31 May 2013 12:23:00 -0000

--- v11
+++ v12
@@ -1,7 +1,7 @@
 Variable "scan_1D" in MolDynSim
 ===============================

-This variable specifies details of the one-dimensional force field scans in our MATLAB function [mol_ScanPot_1D](Users.Programs.mol_ScanPot_1D). It is a structured variable that should initially contain the following fields :
+This variable specifies details of the one-dimensional force field scans in our[mol_ScanPot_1D.m](Users.Programs.mol_ScanPot_1D) MATLAB function. It is a structured variable that should initially contain the following fields :

 field | description
 ---|---

Developers.Variables.scan_1D modified by Burkhard Schmidt

Burkhard Schmidt — Fri, 31 May 2013 12:02:32 -0000

--- v10
+++ v11
@@ -1,7 +1,7 @@
 Variable "scan_1D" in MolDynSim
 ===============================

-This variable specifies details of the one-dimensional force field scans in our MATLAB function. It is a structured variable that should initially contain the following fields :
+This variable specifies details of the one-dimensional force field scans in our MATLAB function [mol_ScanPot_1D](Users.Programs.mol_ScanPot_1D). It is a structured variable that should initially contain the following fields :

 field | description
 ---|---

Developers.Variables.scan_1D modified by Burkhard Schmidt

Burkhard Schmidt — Fri, 31 May 2013 11:59:15 -0000

--- v9
+++ v10
@@ -3,38 +3,13 @@

 This variable specifies details of the one-dimensional force field scans in our MATLAB function. It is a structured variable that should initially contain the following fields :

-spec1
------                       
-* select first molecular species
-* example: 3 (integer)
-
-spec2 
------
-* select second molecular species
-* example: 3 (integer)
-
-euler1
-------
-* rotate first molecule (Euler z, x, z rotations)
-* example: [0; 0; 0] (column vector of 3 real numbers)             
-
-euler2
-------
-* rotate second molecule (Euler z, x, z rotations)
-* example: [0; 0; 0] (column vector of 3 real numbers)             
-
-shift1
-------
-* translate first molecule
-* example: [0; 0; 0]   (column vector of n_dim real numbers)                       
-
-shift2
-------
-* translate second molecule
-* example: [0; 0; 0]   (column vector of n_dim real numbers)                       
-
-coordinate
-----------
-* scan coordinate (along z)
-* example: linspace(0.3, 0.7, 41) (vector of real numbers) 
+field | description
+---|---
+spec1 | select first molecular species (integer)
+spec2 | select second molecular species (integer)
+euler1| rotate first molecule (Euler z, x, z rotations, column vector of 3 real numbers)             
+euler2| rotate second molecule (Euler z, x, z rotations, column vector of 3 real numbers)             
+shift1 | translate first molecule (column vector of n_dim real numbers)                       
+shift2| translate second molecule (column vector of n_dim real numbers)                       
+coordinate | scan coordinate along z, e.g., linspace(0.3, 0.7, 41) (vector of real numbers)

WikiPage Developers.Variables.scan_1D modified by Burkhard Schmidt

Burkhard Schmidt — Tue, 27 Nov 2012 19:14:17 -0000

--- v8
+++ v9
@@ -1,7 +1,7 @@
 Variable "scan_1D" in MolDynSim
 ===============================
 
-This variable specifies details of the one-dimensional force field scans in our MATLAB function. It is a structured variable containing the following fields :
+This variable specifies details of the one-dimensional force field scans in our MATLAB function. It is a structured variable that should initially contain the following fields :
 
 spec1
 -----

WikiPage Developers.Variables.scan_1D modified by Burkhard Schmidt

Burkhard Schmidt — Tue, 27 Nov 2012 19:08:36 -0000

--- v7
+++ v8
@@ -36,5 +36,5 @@
 coordinate
 ----------
 * scan coordinate (along z)
-* example: linspace(.3, .7, 41) (vector of real numbers) 
+* example: linspace(0.3, 0.7, 41) (vector of real numbers)

WikiPage Developers.Variables.scan_1D modified by Burkhard Schmidt

Burkhard Schmidt — Tue, 27 Nov 2012 19:05:53 -0000

--- v6
+++ v7
@@ -6,22 +6,35 @@
 spec1
 -----                       
 * select first molecular species
+* example: 3 (integer)
 
 spec2 
 -----
 * select second molecular species
+* example: 3 (integer)
 
 euler1
 ------
-* example: [0; 0; 0]                
-* rotate first molecule
+* rotate first molecule (Euler z, x, z rotations)
+* example: [0; 0; 0] (column vector of 3 real numbers)             
+
+euler2
+------
+* rotate second molecule (Euler z, x, z rotations)
+* example: [0; 0; 0] (column vector of 3 real numbers)             
 
 shift1
 ------
-* example: [0; 0; 0]                
 * translate first molecule
+* example: [0; 0; 0]   (column vector of n_dim real numbers)                       
+
+shift2
+------
+* translate second molecule
+* example: [0; 0; 0]   (column vector of n_dim real numbers)                       
 
 coordinate
 ----------
-* linspace(.3, .7, 41); % scan coordinate (along z)
+* scan coordinate (along z)
+* example: linspace(.3, .7, 41) (vector of real numbers)

WikiPage Developers.Variables.scan_1D modified by Burkhard Schmidt

Burkhard Schmidt — Tue, 27 Nov 2012 18:57:05 -0000

--- v5
+++ v6
@@ -1,8 +1,27 @@
 Variable "scan_1D" in MolDynSim
 ===============================
 
-This variable specifies details of the force field scans in our [mol_ScanPot_1D.m](Users.Programs.mol_ScanPot_1D) MATLAB script. It is a structured variable containing the following fields :
+This variable specifies details of the one-dimensional force field scans in our MATLAB function. It is a structured variable containing the following fields :
 
-* to be written
-* to be written 
-* ....
+spec1
+-----                       
+* select first molecular species
+
+spec2 
+-----
+* select second molecular species
+
+euler1
+------
+* example: [0; 0; 0]                
+* rotate first molecule
+
+shift1
+------
+* example: [0; 0; 0]                
+* translate first molecule
+
+coordinate
+----------
+* linspace(.3, .7, 41); % scan coordinate (along z)
+

WikiPage Developers.Variables.scan_1D modified by Burkhard Schmidt

Burkhard Schmidt — Tue, 27 Nov 2012 14:41:13 -0000

--- v4
+++ v5
@@ -1,7 +1,7 @@
 Variable "scan_1D" in MolDynSim
 ===============================
 
-This variable specifies details of the force field scans in our [mol_scan_1D.m](Users.Programs.mol_scan_1D) MATLAB script. It is a structured variable containing the following fields :
+This variable specifies details of the force field scans in our [mol_ScanPot_1D.m](Users.Programs.mol_ScanPot_1D) MATLAB script. It is a structured variable containing the following fields :
 
 * to be written
 * to be written

WikiPage Developers.Variables.scan_1D modified by Burkhard Schmidt

Burkhard Schmidt — Tue, 13 Nov 2012 18:31:16 -0000

--- v3
+++ v4
@@ -1,5 +1,5 @@
-Variable "scan1D" in MolDynSim
-==================================
+Variable "scan_1D" in MolDynSim
+===============================
 
 This variable specifies details of the force field scans in our [mol_scan_1D.m](Users.Programs.mol_scan_1D) MATLAB script. It is a structured variable containing the following fields :

WikiPage Developers.Variables.scan1D modified by Burkhard Schmidt

Burkhard Schmidt — Tue, 13 Nov 2012 17:40:21 -0000

--- v2
+++ v3
@@ -1,7 +1,7 @@
 Variable "scan1D" in MolDynSim
 ==================================
 
-This variable specifies details of the force field scans in our [mol_scan1D.m](Users.Programs.mol_scan1D) MATLAB script. It is a structured variable containing the following fields :
+This variable specifies details of the force field scans in our [mol_scan_1D.m](Users.Programs.mol_scan_1D) MATLAB script. It is a structured variable containing the following fields :
 
 * to be written
 * to be written