A user friendly tool for Interaction Data Analysis
TOPS is short for Tool for Combination Perturbation Screen Analysis and strives to be a benchtop-scientist-friendly data analysis, filtering and visualization tool primarily for functional genomics screening data.
We support data derived from Luminex multiplexing as described in our Nature Chemical Biology paper or from shRNA screens using Massively Parallel Sequencing natively. However the input file format for TOPS is simple and basically any data that follow the general format:
Name of interaction partner A, Name of interaction partner B, numerical score
.. can be imported and analyzed, plotted, filtered and explored with TOPS.
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