Added slurm options for ntasks-per-node and nodes. May break classic TM5.
Merge from default.
Changed point sampling to slopes, updated TCCON station generator.
Added code to generate quick TCCON station list.
Fix typo.
Removed unnecessary script
NF90 cannot read string attributes, throw an error if REGION_NAMES is a string
Many more regions to aggregate for the high latitude work
Workaround for python 3.11.14 thread pinning
Make HDF5_FILE_LOCKING part of rc settings
Fixed threading on python 3.11+
Merged default back into TM5MP-mods
A separate RunTM5 script not needed for TM5 MP
Commit after merge on NAS
VPP now reads writes region names to variable instead of file attribute, TM5 prints out system time every model day
Working but slow VPP code
Use newer files from Mendonca for NNF, and modify for Electra cluster
Unified RunTM5_base.py for both TM5 Zoom and TM5 MP
Merge PS TM5MP branch with default branch of SB
Removed unnecessary file
Small typo, and removed unnecessary queue_utils.py copy.
Most of these rc files are not needed, but I do not want them to disappear either
Small typo.
Merge on NCCS
Fixed to Emission code to not depend on dS_m2
Merge on NAS
MC runs do not need to produce satellite daily summary files
Trying to get OH optimization working, intermediate code, not fixed yet
More tweaks to get OH optimization working
Added code for optimizing OH, forward mode works, committing before *really* messing up adjoint
Added code for optimizing OH, forward mode works, committing before messing up adjoint
Merge on NCCS
daily satellite summary files now made in parallel
Merge on pleiades
rc files for OCO2 v11 MIP
Added code for OCO3 cosampling
Bugfix for tags.
rc files for new TROPOMI + isotope inversions
gradient test pass/fail messages logged instead of written to stderr
Added assimilation filtering based on surface pressure difference
Calculation of satellite and point costs speeded up using mpire.WorkerPool
par.workers defaults to 1 when not specified
Tried to add a WARN log message about default rc key, got sick of the four prints, took it out
rc files for 2018-2022 inversions with d13CH4
Better speedup with mpire.WorkerPool than F2PY
Automating different OMP_NUM_THREADS at different stages of 4dvar (should have been part of last commit)
Automating different OMP_NUM_THREADS at different stages of 4dvar
Different scaling to achieve balanced prior
TROPOMI CH4 retrievals from Bremen
GFED5 beta methane emissions
Print timing info of cost calculation steps
Reverting point interpolation setting.
Updates for TM5MP, adjoint mode and var4d runs.
changed par.multiproc to par.workers
moveFiles prints warning if no files are to be moved
Merge on NAS
Trying to add option to re-read rc file in the middle of a job chain
Merges with code from Peter Somkuti
Added Bremen retrievals
Updated readme.
Adding a readme
Minor fix.
Small updates to discover header and MP.rc
Added more to RunTM5MP
Added new RunTM5 base class for TM5MP.
Needed to add queue_utils.py
F2PY compile line with meson backend.
Added user scripts for Peter Somkuti.
Merge on NCCS
Using mpire.WorkerPool to split satellite departure calculation across multiple processes
dkg now in common meteo folder
Merge on NCCS
Added keys to force re-reading rc file, may or may not work
Generate 3x2 meteo
Merged on NAS
Fixed carbon units in AOML ocean fluxes
Merged on NCCS
Modifications and rc files to run CH4+C13 on NCCS
Getting the CH4+d13CH4 code to run with new emissions
gol prints can now include current time, set by defining progress_includes_time
Tracer name can be supplied as an argument to parseGFED4EmisFactors
Mods on NCCS to get rid of HDF
Added symlink for v11 MIP
Forgot to add the relevant rc file for TCCON evaluation
TCCON soundings from the official TCCON folks now
Fix include
Fix include
LNLGOGIS rc file
Mods on NAS
Changes for OCO2 MIP 2025
Changes for OCO2 MIP 2025
Merged on pleiades
The logic to decide whether the next step is the first or last fwd run is flawed, hence removed
Thanks to pleiades filesystem hijinks, I need to print out the files that fail to load between steps
Debug lustre filesystem mounting
Print date/time with error message
Explicitly specify the filesystems needed on pleiades
rc files for CO2C13 runs with LPJ-WSL
Print number of threads > 99
rc files for TROPOMI+d13C inversions