Tinkercell_new

• You can build the project by steps stated in following link: https://docs.google.com/document/pub?id=1THLfivuMpA7W3PKtlHgiO_laJ8XS9XLnhV03U6wgm-A
• libSBOLc integration issues
  • undefined function error solved when declare #LIBXML_STATIC in ModuleTools/sbolTools.h
  • If there are some errors in regards with libsbol.dll and libxml2.dll, please copy those under ./libSBOLc/release/library and paste to ./BUILD/bin
• Mostly the project was built by setting debug mode by put “DEBUG” for BUILD_TYPE during CMake Build.
• I suggest to export the path of related libraries(QT, compilers such as MinGW) in environment variable(PATH for windows). Then, CMake will automatically locate libraries when you build the source.
• execute mingw32-make package in the BUILD directory
• After the build
  • Copy ./BasicTools/NodesTree.nt and ./BasicTools/ConnectionsTree.nt into ./BUILD/bin folder
  • Copy ./Graphics folder into ./BUILD/bin folder

• Tinkercell is able to import and export SBOL document. Moreover, symbols in SBOL window can be exported to other windows, and add the components to other models for simulation.
• The current version of Tinkercell uses SBOL Visual v. 1.0 for the icon. Also, it uses libSBOLc for internal SBOL Document manipulation.
• The target SBOL version that editor complies is SBOL v. 1.1. The current version of Tinkercell doesn’t support further version of SBOL.

• Windows7, QT 4.8.6, Code::Block 13.12, mingw32-base 2013072200, mingw32-gcc-g++ 4.8.1-4
• WIndows 8.1, QT 4.8.6, Code::Block 13.12, mingw32-base 2013072200, mingw32-gcc-g++ 4.8.1-4

• Some icons should be changed
  • To change icons, you first need to code the icon in compliance with SBML Render Extension
  • Then, you need to add the xml file in .\Core\Tinkercell.qrc
    • ex)<file alias="DNATool.xml">../icons/DNATool.xml</file>
• Change SBOL export Icon
  • ModuleTools\SBOLTool.cpp:177 - 190
• Change “Move SBOL icon to other documents” Icon
  • ModuleTools\SBOLConverterTool.cpp:217-229
• Fixing SetPos problems when importing SBOL document and render it in network windows
  • .\ModuleTools\SBOLTool.cpp:1267-1323

• Make binary release from the current source version
• Current build is able to make the install file by following original Tinkercell build manual(https://docs.google.com/document/pub?id=1THLfivuMpA7W3PKtlHgiO_laJ8XS9XLnhV03U6wgm-A, with following step 12(a) for windows) but the following error popped up:"The application was unable to start correctly (0xc00000142). Click OK to close the application." I think this caused by introducing libSBOLc into the previous Tinkercell. Some of the reference documents suggested that it happens when the linking library is formed without valid signal.

• Change libSBOLc’s build path so that the project can use libSBOLc as submodule, directly.