Fernando Amat committed [292db8]

Updated documentation

Fernando Amat committed [89d3a5]

Updated binaries for cell division using machin...

Fernando Amat committed [8bdace]

Merge branch 'master' into RockefellerConfocal

Fernando Amat committed [7362d7]

Changed default classifier

Fernando Amat committed [f76488]

Skipped IO of images without annotations while ...

Fernando Amat committed [18ab11]

Debugging: detected error in precision calculat...

Fernando Amat committed [6b2adb]

Before adding config option to output features

Fernando Amat committed [788d7c]

Before testing in Linux

Fernando Amat committed [b48f69]

Added matlab script to compare CDWT classifier ...

Fernando Amat committed [da3d12]

Fixed bug in eig3 function for diagonal matrice...

Fernando Amat committed [9765fe]

Merging with debugged cell division branch

Fernando Amat committed [7fb134]

Stable code with new classifier. Testing it in ...

Fernando Amat committed [2259da]

Cell division GUI now sorts cell division by cl...

Fernando Amat committed [6c3c00]

Added variable to nuclei class to store cell di...

Fernando Amat committed [2e760d]

First running test with features directly calcu...

Fernando Amat committed [8ddf86]

Added define to output TGMM CDWT features at ru...

Fernando Amat committed [9a0efe]

Changed Matlab GUI code to generate features in...

Fernando Amat committed [978189]

Fixed bug: precision W was not being calculated...

Fernando Amat committed [edd38d]

Matlab script to recover previous Drosophila an...

Fernando Amat committed [77e703]

Testing training error

Fernando Amat committed [b5cf70]

Added code to save CDTW features during run-time

Fernando Amat committed [b2f660]

Fixed minor bug for 2D stacks

Fernando Amat committed [8763c9]

Fixed bug for 2D images

Fernando Amat committed [cbd342]

Mex file recompiled for windows

Fernando Amat committed [f0243e]

Removed old config parameter thrPrctile

Fernando Amat committed [6efae9]

Added config option to write out full supervoxe...

Fernando Amat committed [40884c]

Fixed unsigned int problem for XML importer

Fernando Amat committed [6fc845]

Added define SV_KEEP_WITHOUT_TRIMMING to be abl...

Fernando Amat committed [4053e1]

Tested under Linux. Make sure to have CUda Tool...

Fernando Amat committed [1aefb0]

Before testing on linux

Fernando Amat committed [77ea96]

Added option to use image median filter during ...

Fernando Amat committed [8a9be4]

Add define for median filter

Fernando Amat committed [ac19f5]

Initial branching

Fernando Amat committed [e57d42]

Filter for supervoxels based on ratio of number...

Fernando Amat committed [70c465]

Before testing Gaussian crazy displacement

Fernando Amat committed [9db13c]

Fixed minor bugs and started updating documenta...

Fernando Amat committed [78e710]

Added triangle method (Fiji) for finding backgr...

Fernando Amat committed [50bf3d]

Supervoxels are cached only locally the same wa...

Fernando Amat committed [0351e5]

Fix small issues with saving annotations and fe...

Fernando Amat committed [bcc2e6]

Fixed code so we can load solutions that do not...

Fernando Amat committed [bb2d9e]

Cached also XML files to not load all tracking ...

Fernando Amat committed [9d1b15]

Added if to avoid cell division rules if thresh...

Fernando Amat committed [44dae1]

Minor fix

Fernando Amat committed [59f159]

Supervoxels are cached only locally the same wa...

Fernando Amat committed [dcfc3a]

Added Matlab triview GUI original code as a bas...

Fernando Amat committed [5e4140]

Improving user guide doc

Fernando Amat committed [d54d37]

First working version of cell division GUI anno...

Fernando Amat committed [737edd]

Before changing to cache TGMM xml output

Fernando Amat committed [f3f110]

Added option to config file to selecte CDWT cla...

Fernando Amat committed [4272bf]

Still debugging

Fernando Amat committed [576c78]

aa

Fernando Amat committed [5d142f]

Before checking classifier performance

Fernando Amat committed [75774b]

Added KLB support

Fernando Amat committed [b92484]

Fixed issue with TGMM calculating CDWT features...

Fernando Amat committed [e03850]

Everything tested for CDWT

Fernando Amat committed [179ca1]

Fixed numerical inestability for eig3<float>

Fernando Amat committed [cfd31a]

Added external dependencies for Matlab gui

Fernando Amat committed [3a95b7]

Bin files without PICTools dependency

Fernando Amat committed [88435c]

Commit before adding KLB support

Fernando Amat committed [7bcee7]

Added KLB submodule

Fernando Amat committed [19649e]

Fixed bug in mkdir with WIndows and forwards sl...

Fernando Amat committed [99cb6b]

Starting cell division trainer GUI

Fernando Amat committed [ce0cb7]

Modified CMakeList to compile code for all cuda...

Fernando Amat committed [194489]

Added dll for cuda 6.5 and Visual Studio 2013 r...

Fernando Amat committed [32068b]

Modify code so all paths are consistent using f...

Fernando Amat committed [5c48af]

Added multithreaded multislice 2D median filter...

Fernando Amat committed [e90e67]

Small executable for Burkhard to write centroid...

Fernando Amat committed [6653b5]

New CUDA dlls

Fernando Amat committed [5aa08c]

Finished coding first version of blockwise elli...

Fernando Amat committed [f15600]

Fixed bug with pointer offset for blocks. Now r...

Fernando Amat committed [1ce8f0]

Minor changes

Fernando Amat posted a comment on discussion General Discussion

Dear Chen, Can you please run the following command from terminal (as specified in...

chen qian posted a comment on discussion General Discussion

Dear Fernando, I ran the windows version of the program, and have some error message....

Fernando Amat committed [d0ece8]

Corrected a couple of typos in the README file ...

Fernando Amat committed [8f2bff]

Deleted fast hash table since we do not use it ...

Fernando Amat committed [afb2a8]

Added folder with fast hash table look up for s...

Fernando Amat committed [b16919]

Finished debugging. 50% faster and less memory ...

Fernando Amat committed [49efc5]

First implementation with constant find segment...

Fernando Amat committed [4d00cb]

Fixed small bug in merging sets. We needed to c...

Fernando Amat committed [513ec7]

Added header

Fernando Amat committed [846f07]

Code reimplemented with efficient hash table (n...

Fernando Amat committed [b3c5f7]

Using direct look up table. 5X less memory and ...

Fernando Amat committed [56fa91]

Added files to gitignore

Fernando Amat committed [bfb031]

Updated user guide

Fernando Amat committed [7fee52]

Added instructions on MAtlab scripts to import ...

Automatic cell lineage reconstruction released /readTGMM_XMLoutput.zip

Automatic cell lineage reconstruction released /TGMM_UserGuide.pdf

Fernando Amat committed [9e089f]

Added comments to code

Fernando Amat committed [7a5e08]

Added user guide as documentation

Automatic cell lineage reconstruction released /TGMM_NM2013_paperRelease.zip

Automatic cell lineage reconstruction released /testData.zip

Fernando Amat committed [7d79f9]

Added function to generate temporal Haar featur...

Fernando Amat committed [48dc02]

Intermediate commit

Fernando Amat committed [35a1ac]

Ported asll the latest modifications to Linux

Fernando Amat committed [d3a232]

Merge branch 'master' of https://bitbucket.org/...

Fernando Amat committed [ce882a]

Added project to generate training data. We can...

Fernando Amat committed [a3fe75]

Update README with Linux instructions and fixed...

Nakul Verma committed [83063e]

Tested in linux machine to make sure it runs (n...

Fernando Amat committed [03997c]

Merged master with TGMM linux

Fernando Amat committed [d18294]

Fixed a major bug in the generation of training...