Recent changes to Homehttps://sourceforge.net/p/tfbsscanner/notification/Home/Recent changes to HomeenTue, 11 Oct 2011 14:36:25 -0000WikiPage Home modified by Young Min Ohhttps://sourceforge.net/p/tfbsscanner/notification/Home/<pre>--- v4 +++ v5 @@ -1,4 +1,21 @@ -● asdfasdf +● Notice +Our paper about TFBS-Scanner is in review for publication. +Until all of publication processes are finished, all of files for TFBS-Scanner are locked with passwords. + +● DISCLAIMER! +We notice the DISCLAIMER of 'TRANFAC database ver 7.0 -public'. +The TRANSFAC database is free for users from non-profit organizations only. + +You can get the detail information about visit 'TRANFAC database ver 7.0 -public' through below +http://www.gene-regulation.com/cgi-bin/pub/databases/transfac/search.cgi +(You need a registration.) + +● Reference +Matys V, et al. 'TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes.' Nucleic Acids Res. 2006 Jan 1;34(Database issue):D108-10. + +● Different TFBS prediction performance between TRANSFAC ver 9.4 professional and ver 7.0 public +You can get the predicted TFBS results (based only on ver 7.0) below figure by using TFBS-scanner based on the given 'test_input.xlxs' in 'Downloads' menu. +※we do not serve the plotting program for predicted TFBSs or other ChIP-Seq results. ![alternate text](https://sourceforge.net/p/tfbsscanner/notification/Home/attachment/Performance%20difference_example.png) </pre>Young Min OhTue, 11 Oct 2011 14:36:25 -0000https://sourceforge.netf96d69866fb46b5b2806c4d04adeca9b109e2998WikiPage Home modified by Young Min Ohhttps://sourceforge.net/p/tfbsscanner/notification/Home/<pre>--- v3 +++ v4 @@ -1,5 +1,6 @@ ● asdfasdf ![alternate text](https://sourceforge.net/p/tfbsscanner/notification/Home/attachment/Performance%20difference_example.png) + For the detail view for above figure, click the below URL http://sourceforge.net/projects/tfbsscanner/files/For%20manual/Performance%20difference_example.pdf/download </pre>Young Min OhTue, 11 Oct 2011 14:28:55 -0000https://sourceforge.net326c67ea5f07c0bf0f77b79938e6872ce3e99e39WikiPage Home modified by Young Min Ohhttps://sourceforge.net/p/tfbsscanner/notification/Home/<pre>--- v2 +++ v3 @@ -1,3 +1,5 @@ ● asdfasdf ![alternate text](https://sourceforge.net/p/tfbsscanner/notification/Home/attachment/Performance%20difference_example.png) +For the detail view for above figure, click the below URL +http://sourceforge.net/projects/tfbsscanner/files/For%20manual/Performance%20difference_example.pdf/download </pre>Young Min OhTue, 11 Oct 2011 14:28:38 -0000https://sourceforge.net58449d49b7b4cf8c5a1084d701000b80e623a003WikiPage Home modified by Young Min Ohhttps://sourceforge.net/p/tfbsscanner/notification/Home/<pre>--- v1 +++ v2 @@ -1,5 +1,3 @@ -Welcome to your wiki! - -This is the default page, edit it as you see fit. To add a page simply reference it within brackets, e.g.: [SamplePage]. - -The wiki uses [Markdown](/p/tfbsscanner/notification/markdown_syntax/) syntax. +● asdfasdf + +![alternate text](https://sourceforge.net/p/tfbsscanner/notification/Home/attachment/Performance%20difference_example.png) </pre>Young Min OhTue, 11 Oct 2011 14:27:47 -0000https://sourceforge.netf7b0bae4c9256b5326dd4bdf9ba077fae4ea7787WikiPage Home modified by Young Min Ohhttps://sourceforge.net/p/tfbsscanner/notification/Home/Welcome to your wiki! This is the default page, edit it as you see fit. To add a page simply reference it within brackets, e.g.: [SamplePage]. The wiki uses [Markdown](/p/tfbsscanner/notification/markdown_syntax/) syntax. Young Min OhTue, 11 Oct 2011 14:19:40 -0000https://sourceforge.net40dd2f7934c63bfb8221e2c1eb5d87889022525a