From: Dominique B. <do...@de...> - 2011-07-07 23:18:26
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Hi, How can I convert a nrrd file to (hdr/img) or (mhd/raw) or (nii) ? Can 'unu' be used for that purpose? Thanks Dominique |
From: Gordon L. K. <gl...@uc...> - 2011-07-08 00:30:25
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I assume you're asking about Analyze, MetaIO, and NIfTI files, respectively. The nrrd library, and unu, don't support exporting these formats (and importing them is usually with "unu make" trickery). Adding additional formats is a high priority, but it will probably wait until work on Teem 2.0 starts, as someone will have to implement some new machinery for buffering non-fseek-able input. This is neeeded to determine which reader to use, as these three formats have no consistent "magic" at the beginning of the file. Gordon On Jul 7, 2011, at 6:18 PM, Dominique Belhachemi wrote: > Hi, > > How can I convert a nrrd file to (hdr/img) or (mhd/raw) or (nii) ? > Can 'unu' be used for that purpose? > > Thanks > Dominique > > ------------------------------------------------------------------------------ > All of the data generated in your IT infrastructure is seriously > valuable. > Why? It contains a definitive record of application performance, > security > threats, fraudulent activity, and more. Splunk takes this data and > makes > sense of it. IT sense. And common sense. > http://p.sf.net/sfu/splunk-d2d-c2 > _______________________________________________ > teem-users mailing list > tee...@li... > https://lists.sourceforge.net/lists/listinfo/teem-users > |
From: Gordon L. K. <gl...@uc...> - 2011-07-08 00:38:44
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To try to answer your first question: software like ITK, which I believe supports all these formats, can be used to make a converter. Does anyone know of some other command-line tool that could do this? Gordon On Jul 7, 2011, at 6:18 PM, Dominique Belhachemi wrote: > Hi, > > How can I convert a nrrd file to (hdr/img) or (mhd/raw) or (nii) ? > Can 'unu' be used for that purpose? > > Thanks > Dominique > > ------------------------------------------------------------------------------ > All of the data generated in your IT infrastructure is seriously > valuable. > Why? It contains a definitive record of application performance, > security > threats, fraudulent activity, and more. Splunk takes this data and > makes > sense of it. IT sense. And common sense. > http://p.sf.net/sfu/splunk-d2d-c2 > _______________________________________________ > teem-users mailing list > tee...@li... > https://lists.sourceforge.net/lists/listinfo/teem-users > |
From: Thomas S. <t.s...@uc...> - 2011-07-08 02:14:50
Attachments:
nrrd2nifti.c
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Hi, in case the mailing list will accept a short (<300 line) ASCII attachment, here's my private little command line tool that uses Teem and niftilib to convert between nrrd and nifti. It's a quick hack, so if you need to fix anything to suit your needs, I'd appreciate to get a better version back :-) Best /Thomas |
From: Dominique B. <do...@de...> - 2011-07-08 02:03:30
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Thanks Gordon, I really hope there is a tool out there to perform the conversion. Dominique On Thu, Jul 7, 2011 at 8:38 PM, Gordon L. Kindlmann <gl...@uc...> wrote: > > To try to answer your first question: software like ITK, which I believe > supports all these formats, can be used to make a converter. > > Does anyone know of some other command-line tool that could do this? > > Gordon > > On Jul 7, 2011, at 6:18 PM, Dominique Belhachemi wrote: > >> Hi, >> >> How can I convert a nrrd file to (hdr/img) or (mhd/raw) or (nii) ? >> Can 'unu' be used for that purpose? >> >> Thanks >> Dominique >> >> >> ------------------------------------------------------------------------------ >> All of the data generated in your IT infrastructure is seriously valuable. >> Why? It contains a definitive record of application performance, security >> threats, fraudulent activity, and more. Splunk takes this data and makes >> sense of it. IT sense. And common sense. >> http://p.sf.net/sfu/splunk-d2d-c2 >> _______________________________________________ >> teem-users mailing list >> tee...@li... >> https://lists.sourceforge.net/lists/listinfo/teem-users >> > > |
From: Steve P. <pi...@ib...> - 2011-07-08 02:36:54
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Hi Dominique - Of course, you can use any simple ITK program to do this - just connect an itk::ImageReader and itk::ImageWriter and they will auto-detect the filename extensions and do the conversion for you. Any of the slicer command line modules will work as long as you ensure that the module itself is a noop (e.g. giving zero iterations or zero radius to a filter). HTH, Steve On Thu, Jul 7, 2011 at 10:03 PM, Dominique Belhachemi <do...@de...>wrote: > Thanks Gordon, > > I really hope there is a tool out there to perform the conversion. > > Dominique > > On Thu, Jul 7, 2011 at 8:38 PM, Gordon L. Kindlmann <gl...@uc...> > wrote: > > > > To try to answer your first question: software like ITK, which I believe > > supports all these formats, can be used to make a converter. > > > > Does anyone know of some other command-line tool that could do this? > > > > Gordon > > > > On Jul 7, 2011, at 6:18 PM, Dominique Belhachemi wrote: > > > >> Hi, > >> > >> How can I convert a nrrd file to (hdr/img) or (mhd/raw) or (nii) ? > >> Can 'unu' be used for that purpose? > >> > >> Thanks > >> Dominique > >> > >> > >> > ------------------------------------------------------------------------------ > >> All of the data generated in your IT infrastructure is seriously > valuable. > >> Why? It contains a definitive record of application performance, > security > >> threats, fraudulent activity, and more. Splunk takes this data and makes > >> sense of it. IT sense. And common sense. > >> http://p.sf.net/sfu/splunk-d2d-c2 > >> _______________________________________________ > >> teem-users mailing list > >> tee...@li... > >> https://lists.sourceforge.net/lists/listinfo/teem-users > >> > > > > > > > ------------------------------------------------------------------------------ > All of the data generated in your IT infrastructure is seriously valuable. > Why? It contains a definitive record of application performance, security > threats, fraudulent activity, and more. Splunk takes this data and makes > sense of it. IT sense. And common sense. > http://p.sf.net/sfu/splunk-d2d-c2 > _______________________________________________ > teem-users mailing list > tee...@li... > https://lists.sourceforge.net/lists/listinfo/teem-users > |
From: Dominique B. <do...@de...> - 2011-07-08 02:12:05
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Hi Steve, Thanks, I will try it right away with my Slicer installation. Cheers Dominique On Thu, Jul 7, 2011 at 10:07 PM, Steve Pieper <pi...@ib...> wrote: > Hi Dominique - > > Of course, you can use any simple ITK program to do this - just connect an > itk::ImageReader and itk::ImageWriter and they will auto-detect the filename > extensions and do the conversion for you. Any of the slicer command line > modules will work as long as you ensure that the module itself is a noop > (e.g. giving zero iterations or zero radius to a filter). > > HTH, > Steve > > On Thu, Jul 7, 2011 at 10:03 PM, Dominique Belhachemi <do...@de...> > wrote: >> >> Thanks Gordon, >> >> I really hope there is a tool out there to perform the conversion. >> >> Dominique >> >> On Thu, Jul 7, 2011 at 8:38 PM, Gordon L. Kindlmann <gl...@uc...> >> wrote: >> > >> > To try to answer your first question: software like ITK, which I believe >> > supports all these formats, can be used to make a converter. >> > >> > Does anyone know of some other command-line tool that could do this? >> > >> > Gordon >> > >> > On Jul 7, 2011, at 6:18 PM, Dominique Belhachemi wrote: >> > >> >> Hi, >> >> >> >> How can I convert a nrrd file to (hdr/img) or (mhd/raw) or (nii) ? >> >> Can 'unu' be used for that purpose? >> >> >> >> Thanks >> >> Dominique >> >> >> >> >> >> >> >> ------------------------------------------------------------------------------ >> >> All of the data generated in your IT infrastructure is seriously >> >> valuable. >> >> Why? It contains a definitive record of application performance, >> >> security >> >> threats, fraudulent activity, and more. Splunk takes this data and >> >> makes >> >> sense of it. IT sense. And common sense. >> >> http://p.sf.net/sfu/splunk-d2d-c2 >> >> _______________________________________________ >> >> teem-users mailing list >> >> tee...@li... >> >> https://lists.sourceforge.net/lists/listinfo/teem-users >> >> >> > >> > >> >> >> ------------------------------------------------------------------------------ >> All of the data generated in your IT infrastructure is seriously valuable. >> Why? It contains a definitive record of application performance, security >> threats, fraudulent activity, and more. Splunk takes this data and makes >> sense of it. IT sense. And common sense. >> http://p.sf.net/sfu/splunk-d2d-c2 >> _______________________________________________ >> teem-users mailing list >> tee...@li... >> https://lists.sourceforge.net/lists/listinfo/teem-users > > |