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Re: [Teem-users] teem-users Digest, Vol 52, Issue 4
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From: Gregory J. <jef...@mr...> - 2011-10-20 18:33:59
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I have been able to compile the matlab teem library on mac and Linux without too much trouble. IIRC it also worked out of the box for Octave. Perhaps a little more documentation & a mention on the web page would be enough. That means that nrrd (not mat) is you interchange fornat, but that works best for me. I suppose there could still be some utility in pure matlab functions to read the simplest data. Best, Greg. Gregory Jefferis On 20 Oct 2011, at 18:20, Fangxiang Jiao <fj...@cs...> wrote: > Hi All, > > I have the same problem with Thomas. What Sergiy mentioned in the email > is a nice > way to do the conversion. But we need SCIRun pipeline to do that, and it > may not be > so convenient. So my suggestion to Gordon is can we integrate some > conversion > like mat to nrrd, mat to txt (back and forth) into teem? > > Thanks, > > Fangxiang > > > > > On 10/19/2011 05:19 AM, tee...@li... wrote: >> Send teem-users mailing list submissions to >> tee...@li... >> >> To subscribe or unsubscribe via the World Wide Web, visit >> https://lists.sourceforge.net/lists/listinfo/teem-users >> or, via email, send a message with subject or body 'help' to >> tee...@li... >> >> You can reach the person managing the list at >> tee...@li... >> >> When replying, please edit your Subject line so it is more specific >> than "Re: Contents of teem-users digest..." >> >> >> Today's Topics: >> >> 1. Re: NRRD vs. MATLAB (Sergiy Volkovych) >> 2. Re: NRRD vs. MATLAB (Gordon L. Kindlmann) >> >> >> ---------------------------------------------------------------------- >> >> Message: 1 >> Date: Wed, 19 Oct 2011 14:07:03 +0300 >> From: Sergiy Volkovych<vol...@gm...> >> Subject: Re: [Teem-users] NRRD vs. MATLAB >> To: Thomas Schultz<tsc...@tu...>, teem-users Lists >> <tee...@li...> >> Message-ID: >> <CAO...@ma...> >> Content-Type: text/plain; charset="iso-8859-1" >> >> Hi Thomas, >> >> I would recommend you to use SCIRun 4.5 for this purpose. >> It supports both Matlab and Teem library. You may easily construct a >> small pipeline (indeed only from two blocks) to read a *.mat file and >> to write it's *.nrrd analog. >> I put in the attachement the image with the construtcted pipeline. The >> left part reads mat and writes nrrd. The right part is to read nrrd >> and to visualize it - just to be sure that it indeed works and you >> receive there the same. >> >> For the back conversion you may use a pipeline ReadField -> >> ExportFieldsToMatlab. >> >> Good luck! >> Sergiy. >> >> 2011/10/19 Thomas Schultz<tsc...@tu...>: >>> Dear Teem Users, >>> >>> having an elegant way of exchanging data between Teem and MATLAB would >>> facilitate collaborations with my current colleagues. For getting data >>> out of MATLAB, does anyone have anything more automated than writing it >>> out as raw data and creating a header using unu make? Even more >>> importantly, does anyone have a NRRD->MAT converter or some MATLAB code >>> that reads NRRD into MATLAB directly? >>> >>> Thanks /Thomas >>> >>> >>> ------------------------------------------------------------------------------ >>> All the data continuously generated in your IT infrastructure contains a >>> definitive record of customers, application performance, security >>> threats, fraudulent activity and more. Splunk takes this data and makes >>> sense of it. Business sense. IT sense. Common sense. >>> http://p.sf.net/sfu/splunk-d2d-oct >>> _______________________________________________ >>> teem-users mailing list >>> tee...@li... >>> https://lists.sourceforge.net/lists/listinfo/teem-users >> -------------- next part -------------- >> A non-text attachment was scrubbed... >> Name: MatlabToNrrd.png >> Type: image/png >> Size: 17377 bytes >> Desc: not available >> >> ------------------------------ >> >> Message: 2 >> Date: Wed, 19 Oct 2011 06:19:10 -0500 >> From: "Gordon L. Kindlmann"<gl...@uc...> >> Subject: Re: [Teem-users] NRRD vs. MATLAB >> To: Thomas Schultz<tsc...@tu...> >> Cc: Teem Users<tee...@li...> >> Message-ID:<927...@uc...> >> Content-Type: text/plain; charset=us-ascii >> >> >> There's some MEX code in teem/src/matlab- is this related to what you want? >> >> On Oct 19, 2011, at 5:30 AM, Thomas Schultz wrote: >> >>> Dear Teem Users, >>> >>> having an elegant way of exchanging data between Teem and MATLAB would >>> facilitate collaborations with my current colleagues. For getting data >>> out of MATLAB, does anyone have anything more automated than writing it >>> out as raw data and creating a header using unu make? Even more >>> importantly, does anyone have a NRRD->MAT converter or some MATLAB code >>> that reads NRRD into MATLAB directly? >>> >>> Thanks /Thomas >>> >>> >>> ------------------------------------------------------------------------------ >>> All the data continuously generated in your IT infrastructure contains a >>> definitive record of customers, application performance, security >>> threats, fraudulent activity and more. Splunk takes this data and makes >>> sense of it. Business sense. IT sense. Common sense. >>> http://p.sf.net/sfu/splunk-d2d-oct >>> _______________________________________________ >>> teem-users mailing list >>> tee...@li... >>> https://lists.sourceforge.net/lists/listinfo/teem-users >>> >> >> >> >> ------------------------------ >> >> ------------------------------------------------------------------------------ >> All the data continuously generated in your IT infrastructure contains a >> definitive record of customers, application performance, security >> threats, fraudulent activity and more. Splunk takes this data and makes >> sense of it. Business sense. IT sense. Common sense. >> http://p.sf.net/sfu/splunk-d2d-oct >> >> ------------------------------ >> >> _______________________________________________ >> teem-users mailing list >> tee...@li... >> https://lists.sourceforge.net/lists/listinfo/teem-users >> >> >> End of teem-users Digest, Vol 52, Issue 4 >> ***************************************** > > > ------------------------------------------------------------------------------ > The demand for IT networking professionals continues to grow, and the > demand for specialized networking skills is growing even more rapidly. > Take a complimentary Learning@Cisco Self-Assessment and learn > about Cisco certifications, training, and career opportunities. > http://p.sf.net/sfu/cisco-dev2dev > _______________________________________________ > teem-users mailing list > tee...@li... > https://lists.sourceforge.net/lists/listinfo/teem-users |