Recent changes to Execution Phases

WikiPage Execution Phases modified by Jesse Erdmann

Jesse Erdmann — Wed, 30 Nov 2011 16:58:13 -0000

--- v2 
+++ v3 
@@ -1,1 +1,1 @@
-TAPDANCE consists of three phases that can be executed independently. [Cross Project Consolodation] and [CIS Calling] both require at least one project to have had it's inserts identified, but those phases do not require those inserts to be identified during the current execution of TAPDANCE.
+TAPDANCE consists of three phases that can be executed independently. [Cross Project Consolodation Phase] and [CIS Calling Phase] both require at least one project to have had it's inserts identified, but those phases do not require those inserts to be identified during the current execution of TAPDANCE.

WikiPage Execution Phases modified by Jesse Erdmann

Jesse Erdmann — Fri, 11 Nov 2011 21:59:58 -0000

--- v1 
+++ v2 
@@ -1,8 +1,1 @@
-Insert Identification requires a user to provide a list of sequences, a tab delimited list of libraries and their barcodes, the sequence of the mutagen used in the experiment and the reference genome to align to. Optionally, metadata describing the libraries can be provided as well.
-
-The steps executed in this phase are as follows:
-
-1. Map sequences to libraries and strip barcodes
-1. Find sequences with the mutagen and strip the mutagen
-1. Align the sequences to the provided genome
-1. Identify unique insertions in each library based on the alignments
+TAPDANCE consists of three phases that can be executed independently. [Cross Project Consolodation] and [CIS Calling] both require at least one project to have had it's inserts identified, but those phases do not require those inserts to be identified during the current execution of TAPDANCE.

WikiPage Execution Phases modified by Jesse Erdmann

Jesse Erdmann — Fri, 11 Nov 2011 21:58:02 -0000

Insert Identification requires a user to provide a list of sequences, a tab delimited list of libraries and their barcodes, the sequence of the mutagen used in the experiment and the reference genome to align to. Optionally, metadata describing the libraries can be provided as well. The steps executed in this phase are as follows: 1. Map sequences to libraries and strip barcodes 1. Find sequences with the mutagen and strip the mutagen 1. Align the sequences to the provided genome 1. Identify unique insertions in each library based on the alignments