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File Date Author Commit
 aligns 2011-06-01 grabherr [r2] First commit.
 analysis 2011-06-27 grabherr [r10] Fixed a bug and made identity expectation confi...
 base 2011-06-01 grabherr [r2] First commit.
 examples 2011-06-01 grabherr [r3] Added examples.
 extern 2011-06-01 grabherr [r4] Added FFT.
 system 2011-06-01 grabherr [r2] First commit.
 util 2011-06-03 grabherr [r6] - Add small scripts to un the examples.
 LICENSE 2011-06-01 grabherr [r1] Initial version.
 MakeDepend.cc 2011-06-01 grabherr [r2] First commit.
 Makefile 2011-06-01 grabherr [r2] First commit.
 Makefile_auto 2011-06-08 grabherr [r7] Introduce class MultiProtein & prepare for dong...
 Makefile_cxx 2011-06-01 grabherr [r2] First commit.
 Makefile_deleta 2011-06-01 grabherr [r2] First commit.
 Makefile_g++ 2011-06-01 grabherr [r2] First commit.
 Makefile_g++_alpha 2011-06-01 grabherr [r2] First commit.
 Makefile_g++_i386 2011-06-01 grabherr [r2] First commit.
 Makefile_g++_i686 2011-06-01 grabherr [r2] First commit.
 Makefile_g++_i86pc 2011-06-01 grabherr [r2] First commit.
 Makefile_g++_ia64 2011-06-01 grabherr [r2] First commit.
 Makefile_g++_macosx 2011-06-01 grabherr [r2] First commit.
 Makefile_g++_x86_64 2011-06-01 grabherr [r2] First commit.
 Makefile_psc 2011-06-01 grabherr [r2] First commit.
 Makefile_targets 2011-06-01 grabherr [r2] First commit.
 README 2011-06-01 grabherr [r2] First commit.
 checkout 2011-06-01 grabherr [r2] First commit.
 run_big 2011-06-03 grabherr [r6] - Add small scripts to un the examples.
 run_small 2011-06-03 grabherr [r6] - Add small scripts to un the examples.

Read Me

Tangerine
Version 0.0, 2011/05/31

Program to align protein sequences

(c) 2011, Manfred Grabherr

Libraries distributed with this package under LGPL:
	Spines: (c) 2010, The Broad Institute
	FFTReal: (c) 2005, Laurent de Soras


1. Legal
--------

This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.

This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
Lesser General Public License for more details.

You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA