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[r2716] by tahoe.yanb

redesign and refactor boundary classes and data format, enable printing boundary contact info

 2013-07-18 00:02:51 Tree
[r2715] by tahoe.cupescathy

radom generation from top of the specimen

 2013-07-16 22:17:42 Tree
[r2714] by tahoe.cupescathy

create:
deposit_cyl: created for deposit_RgdCylBdry & deposit_RgdCylBdryConti
trimCylByHeight: simply trim cylindrical sample by given height; no boundary files needed
isotropicCyl: isotropic compression test simulation for cylindrical sample
modify:
triaxialCyl: change the definition of boundary 2 and 3; currently they stand for the bottom and top plate respectively

 2013-07-16 18:27:22 Tree
[r2713] by tahoe.yanb

*** empty log message ***

 2013-07-16 04:56:33 Tree
[r2712] by tahoe.yanb

mpi ranking not reordered

 2013-07-16 04:38:45 Tree
[r2711] by tahoe.cupescathy

cylinderRBForce: add 'normalfce' to record the total value of the absolute normal force

 2013-07-15 21:31:48 Tree
[r2710] by tahoe.cupescathy

update(UPDATECTL& ctl): add update of cylindrical bdry;
updatectl: add radi_tran; REAL type;
getCylNormalForce(): get sum of the normal force (absolute value) acting on the cylinder; for calculating the average normal stress of the cylinder
cylrgd_bdry<T>::getRadius(): get the cylinder's radius.

 2013-07-15 21:29:29 Tree
[r2709] by tahoe.cupescathy

updateRB: add cylindrical bdry update;
updateRCB: used for triaxial text in cylindrical specimen; update 3 bdry of cylindrical specimen;
triaxialCyl: triaxial test of cylindrical sample;
getRadius: return radius of the cylinder;

 2013-07-15 21:23:35 Tree
[r2708] by tahoe.yanb

simplify plane boundaries and handle infinity in empty compute grids

 2013-07-15 18:09:40 Tree
[r2707] by tahoe.cupescathy

new version, call to new functions

 2013-07-15 16:08:20 Tree
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