File	Date	Author	Commit
Study10_Rest	2014-03-30	Gert Wollny	[aff89f] Initial commit
Study10_Stress	2014-03-30	Gert Wollny	[aff89f] Initial commit
Study1_Rest	2014-03-30	Gert Wollny	[aff89f] Initial commit
Study1_Stress	2014-03-30	Gert Wollny	[aff89f] Initial commit
Study2_Rest	2014-03-30	Gert Wollny	[aff89f] Initial commit
Study2_Stress	2014-03-30	Gert Wollny	[aff89f] Initial commit
Study3_Rest	2014-03-30	Gert Wollny	[aff89f] Initial commit
Study3_Stress	2014-03-30	Gert Wollny	[aff89f] Initial commit
Study4_Rest	2014-03-30	Gert Wollny	[aff89f] Initial commit
Study4_Stress	2014-03-30	Gert Wollny	[aff89f] Initial commit
Study5_Rest	2014-03-30	Gert Wollny	[aff89f] Initial commit
Study5_Stress	2014-03-30	Gert Wollny	[aff89f] Initial commit
Study6_Rest	2014-03-30	Gert Wollny	[aff89f] Initial commit
Study6_Stress	2014-03-30	Gert Wollny	[aff89f] Initial commit
Study7_Rest	2014-03-30	Gert Wollny	[aff89f] Initial commit
Study7_Stress	2014-03-30	Gert Wollny	[aff89f] Initial commit
Study8_Rest	2014-03-30	Gert Wollny	[aff89f] Initial commit
Study8_Stress	2014-03-30	Gert Wollny	[aff89f] Initial commit
Study9_Rest	2014-03-30	Gert Wollny	[aff89f] Initial commit
Study9_Stress	2014-03-30	Gert Wollny	[aff89f] Initial commit
scripts	2014-09-09	Gert Wollny	[0b68c8] correct frequency parameter
.gitignore	2014-04-11	Gert Wollny	[3ff3f7] add files to ignore
Datalicense.txt	2014-09-09	Gert Wollny	[208db1] update scripts to better names
README	2014-11-06	Gert Wollny	[9faccb] update README
Scriptlicense.txt	2014-03-30	Gert Wollny	[aff89f] Initial commit
extra-run-all-quasiperiodic-mia.sh	2014-09-09	Gert Wollny	[208db1] update scripts to better names
extra-run-ica-mia-nr-parallel-freq.sh	2014-09-09	Gert Wollny	[208db1] update scripts to better names
extra-run-ica-mia-nr-parallel-full.sh	2014-09-09	Gert Wollny	[208db1] update scripts to better names
extra-run-ica-mia-nr-parallel.sh	2014-09-09	Gert Wollny	[208db1] update scripts to better names
extra-run.sh	2014-09-09	Gert Wollny	[208db1] update scripts to better names
miamyosegmentset.xsd	2014-03-30	Gert Wollny	[aff89f] Initial commit
run-experiments.sh	2014-09-09	Gert Wollny	[0b68c8] correct frequency parameter
run-ica-quasi-combined-runstat.sh	2014-03-30	Gert Wollny	[aff89f] Initial commit
run-ica-quasi-combined.sh	2014-03-30	Gert Wollny	[aff89f] Initial commit
run-ica-quasi-no-movement.sh	2014-09-10	Gert Wollny	[ec5046] remove the analysis scripts for the Stress/Stud...
run-registration.sh	2014-03-30	Gert Wollny	[aff89f] Initial commit

Read Me

This repository contains annotated myocardial perfusion data. For 
more detailed information about the data please consult 

   http://gigadb.org/dataset/100106

where you can also find a static snapshot of the data and scripts 
that corresponds to the tag 'review2'. 

If you use this data and the scripts for a scientific publication 
please consider citing it as 

  G. Wollny and P. Kellman, "Free breathing myocardial perfusion data 
  sets for performance analysis of motion compensation algorithms", 
  GigaScience, 2014, 3:23

If you use only the data, you may also cite it as 

    G. Wollny and P. Kellman (2014): Supporting material for: "Free 
    breathingly acquired myocardial perfusion data sets for performance 
    analysis of motion compensation algorithms", GigaScience, Database, 
    http://dx.doi.org/10.5524/100106

The scripts in this folder are used to run the motion compensation 
algorithms on the annotated myocardial perfusion data sets provided 
in the sub-folders.

For the usage and distribution terms of the data and the scripts 
see Datalicense.txt and Scriplicense.txt respectively. 

Please consult the supplementary material for additional information. 
---------------------------------------------------------------------

Required software: 

* MIA >= 2.2.0
      http://mia.sf.net

* Bash 

For statistical analysis:

  * R 
  * tcsh 
  * GNU Make 

For any questions regarding the data please post in 

   https://sourceforge.net/p/tabseg/discussion/perf/

so that others may also be able to follow the discussion. 


File descriptions: 

   README
       this file 
 
   Datalicense.txt
       License of the data 

   Scriptlicense.txt
       License of the script files 

   *.sh 
       Scripts to run motion compensation methods 

   miamyosegmentset.xsd
       XML scheme of the segmentation set files 

Scripts:

* run-experiments.sh 
   
    Run the experiments described in the paper (see below) 

* run-ica-quasi-combined.sh

    This is the script to run the Experiment 1 as given in the paper.

* run-ica-quasi-no-movement.sh

    This is the script to run the Experiment 2 as given in the paper.

* extra-run-all-quasiperiodic-mia.sh
  extra-run-ica-mia-nr-parallel-freq.sh
  extra-run-ica-mia-nr-parallel-full.sh
  extra-run-ica-mia-nr-parallel.sh
  extra-run.sh
   
    Additional experiments that are not related to the published results. 

* run-registration.sh

    Helper script