Menu ▾ ▴

#312 Mouse strain plugin (name incompleate)

open-wont-fix
Olly Burren
None
1
2012-08-29
2012-07-12
Mikkel Christensen
No

When the name NOD.B6 Idd18.4, Idd18.2 was added to the database only the first part ( NOD.B6 Idd18.4) was shown in the summary table on the result page. When the comma after Idd18.4 was removed the full name is showed.

Indicating that there was a split on comma, but I looked for an split /,/ statement in both persistable::strain.pm and strain_view.tt but there are none

Discussion

  • Olly Burren

    Olly Burren - 2012-07-25
    • priority: 5 --> 1
     

  • Olly Burren

    Olly Burren - 2012-08-23
    • priority: 1 --> 5
     

  • Olly Burren

    Olly Burren - 2012-08-29

    This happens due to the loader bp_seqfeature_load.pl. When it loads this field it seems to truncate based on the comma value. I assume that the way around it is to add quotes to sensitive fields in the GFF file to be uploaded so that Name="NOD.B6 Idd18.4, Idd18.2" but I haven't tested this.

    However the recommendation should be to avoid using ',' in strain names unless absolutely neccessary. I have set to won't fix as it's useful to have this behaviour documented

     

  • Olly Burren

    Olly Burren - 2012-08-29
    • priority: 5 --> 1
    • status: open --> open-wont-fix