Re: [svtoolkit-help] Samtool

[Wusheng Z. <min...@gm...>]

Hi Daren,

Did you try "which samtools" and what shows?

Best regards,
Wusheng

Liu, Daren T. <dl...@cu...> 于2018年8月13日周一 上午8:49写道：

> Hi User Support for Genomestrip,
>
>
>
> I am currently running the preprocessing step of the pipeline. However, I
> am getting an error message saying: samtools not found. I have provided the
> path for samtools in the global environment as well as added the path to my
> Bashrc Script. Have you encountered problems like this before? Our workflow
> manager is in the style of SGE and we are using the latest version of
> samtools. Attached are the error messages and wrapper script.
>
>
>
>
> Best,
>
> Daren
>
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