[svtoolkit-help] Samtool

[Liu, D. T. <dl...@cu...>]

Hi User Support for Genomestrip,

I am currently running the preprocessing step of the pipeline. However, I am getting an error message saying: samtools not found. I have provided the path for samtools in the global environment as well as added the path to my Bashrc Script. Have you encountered problems like this before? Our workflow manager is in the style of SGE and we are using the latest version of samtools. Attached are the error messages and wrapper script.


Best,
Daren