Re: [svtoolkit-help] Is it possible to install Genome STRiP on an HPC cluster with SLURM as the management software?

[Thomas F. <Tho...@in...>]

Dear Wusheng,

I have been using genome STRIP on two clusters with SLURM.

On the first one the Drmaa interface was available and
very easy to use. You simply have to make sure that the
Drmaa library file (libdrmaa.so) is in your LD_LIBRARY_PATH.

On the second cluster there is no Drmaa interface (not
implemented in part because of the scheduling policy).
On this cluster I found no solution except to run Genome
STRP as a single process which is clearly not convenient.
If you find a solution for this I would be very much interested.

By the way, it would be nice, when using the Queue workflow
engine to control the maximum number of (simultaneous) submissions
to reduce our footprint on the cluster Queue.
I don't know if it is currently possible.

Best regards,
Thomas


Le 18/05/2018 à 18:38, Wusheng Zhang a écrit :
> Dear Genome STRiP users,
>
> I am new to this software and intend to install this software on my 
> university HPC cluster. But the cluster management software the 
> university is using is the SLURM rather than LSF or SGE. In this 
> sense, is it still possible to install Genome STRiP on my university 
> cluster and is there anything I need to change based on the original 
> installation steps? Thank you very much.
>
> Best regards,
> Wusheng
>
>
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Thomas Faraut

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