[svtoolkit-help] RedundancyAnnotator

[Thomas F. <Tho...@in...>]

Dear GenomeSTRIP team,

We used successfully genomeSTRIP to detect medium to large deletions in 
goats.
For smaller deletions, we use another variant detection tool (lumpy) but
would like to be able to use the RedundancyAnnotator from the svtoolkit to
detect duplicate calls.

Is it possible to use the RedundancyAnnotator with a vcf file provided by
another SV genotyping tool provided that the genotype likelihoods are
available ?
Or is this redundancy score calculation described in one of the genomeSTRIP
paper ?

Thank you in advance for your help.

Best regards,
Thomas Faraut

-- 
Thomas Faraut

New email address Tho...@in...

UMR 1388 INRA-INPT GenPhySE
Tel: +33 (0)5 61 28 54 57
http://genphyse.toulouse.inra.fr