[svtoolkit-help] "Invalid sequence position"

[John B. <jo...@we...>]

Pre-processing of one(of 270+) deep BAM files has failed with:

...
INFO  12:54:38,366 ComputeGCProfiles - Processing input file
org.broadinstitute.sv.dataset.SAMFileLocation@986cff74 ...
Exception in thread "main" java.lang.RuntimeException: Invalid sequence
position: 17:81195230
...

Where would this have come from?  The pipeline has been the same to prepare
all 270+ of the (25x deep) BAMs, and this is the only failure.  Any
suggestions on what might be wrong and how to fix it will be most welcome!

Thanks
John

-- 
John Broxholme
Wellcome Trust Centre for Human Genetics
Roosevelt Drive, Oxford, OX3 7BN, UK