Re: [svtoolkit-help] A suggestion or question for the input file

[Bob H. <han...@br...>]

In Genome STRiP, most of the command line arguments that accept multiple 
values will let you pass them one of two ways (this includes -I for 
input bam files):

-I single.bam
-I file1.bam -I file2.bam -I file3.bam
-I filelist.list

To use the last form, the filename _must_ end in ".list" and you should 
list the input arguments (in this case bam files) one per line in the file.

-Bob

On 3/7/13 3:16 AM, lishiyong wrote:
> Hi:
> I have 22 samples(11 tumour samples and 11 matched adjacent non-tumour 
> samples). Each sample has been sequenced almost 50X whole genome. I 
> want to use the genome-strip to detect the SV. But it would take too 
> much time to merge into one bam,and too much memory to storage the 
> bam. Could it get a list of each sample's bam as the input? or is 
> There another way to solve this problem?
> Best wishes to you.
> Shiyong li
>
>
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