Re: [svtoolkit-help] for problem of installing genome strip

[Bob H. <han...@br...>]

This exception is coming from Queue, which is the load management 
software from the GATK.
It seems to be trying to resolve the name of the local machine, which is 
maybe set to something non-standard on your system.

Could you try posting this to the GATK forums on VanillaForum and see if 
you get some help there?
I assume you have already googled to see if someone else has had this 
problem with Queue.
It is not something I have run into before.

-Bob

On 3/3/13 6:18 AM, ÖìÕþÁØ wrote:
>
> Dear Doctor,
>
> I am sorry to botter you.
> When I am installing Genome Strip, I run ./discovery.sh.  met bugs below:
>
> SVToolkit version 1.04 (build 1068)
> Build date: 2013/01/14 19:34:19
> Web site: http://www.broadinstitute.org/software/genomestrip
> Exception in thread "main" java.lang.ExceptionInInitializerError
>         at 
> org.broadinstitute.sting.queue.engine.QGraphSettings.<init>(QGraphSettings.scala:64)
>         at 
> org.broadinstitute.sting.queue.QCommandLine.<init>(QCommandLine.scala:85)
>         at 
> org.broadinstitute.sting.queue.QCommandLine$.main(QCommandLine.scala:49)
>         at 
> org.broadinstitute.sting.queue.QCommandLine.main(QCommandLine.scala)
> Caused by: java.net.UnknownHostException: core 7: core 7
>         at java.net.InetAddress.getLocalHost(InetAddress.java:1426)
>         at 
> org.broadinstitute.sting.queue.util.SystemUtils$.<init>(SystemUtils.scala:35)
>         at 
> org.broadinstitute.sting.queue.util.SystemUtils$.<clinit>(SystemUtils.scala)
>         ... 4 more
>
> my java version is
> java version "1.6.0_24"
> OpenJDK Runtime Environment (IcedTea6 1.11.5) (Gentoo build 1.6.0_24-b24)
> OpenJDK 64-Bit Server VM (build 20.0-b12, mixed mode)
>
> Would you mind helping me to figure out this problem?
>
> Thank you very much.
>
> best wishes,
>
> Zhenglin Zhu
>
>
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