[svtoolkit-help] Questions regarding the output

[Jaemin K. <jm...@sn...>]

Hi, I've been asking quite a few questions about GenomeSTRiP and answers have been very helpful. 

I have two additional questions:

1. When you actually count the number of deletion sites in your paper, did you count the ones with "PASS" quality only? 
2. How did you calculate the deletion length? Did you use the GSCOORDS information (and take the subtraction between biggest and smallest coordinates)? 


Thanks for your kindness. 


Regards, 

Jaemin Kim