[svtoolkit-help] high depth region

[Ashish K. <as...@we...>]

Hi Bob,

While trying to run discovery pipeline over the whole-genome, there are certain regions that are high depth region (and presumably very low complexity).
For eg. on a chr10's 2Mb region, the discovery is able to complete only about 20% of the region in 3 days of computation.

Shall I parallelise this region further into smaller discovery regions or there are other ways that GenomeSTRiP can cope up with in such a situation?

Thanks,
Ashish