[svtoolkit-help] A Question aoubt Genome STRip Genome Mask Files

[Jaemin K. <jm...@sn...>]

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.Code { border: #8b4513 1px solid; padding-right: 5px; padding-left: 5px;color: #000066; font-family: 'Courier New' , Monospace;background-color: #ff9933; }Hi, 

I'm Jaemin Kim, a graduate student in Seoul National University in Korea. 

I'm trying to extract the CNV of horse genomes and I started with running Mask Files. 
I guess the computation is very heavy; it takes about 2 days to compute 25Mb chromosome 31. 
I see that it is allowed to compute chromosome by chromosome and then merge later. 

What if I even partition the chromosome region (for instance, by 10Mb) and then merge later? I know this would change the result of output Mask files, but do you think this would be significantly different? 

I need to make the computation as fast as possible, and so I need your advice. 


Thank you so much for your consideration!
I will be waiting for your reply.


Sincerely, 

Jaemin Kim