[svtoolkit-help] STRiP Unrecognized sequence: 1:0-0

[Jingerbread <ae4...@gm...>]

Hi, we are very excited about GenomeStrip and have been trying to use
it. However, I got the following error. Can you please give some hints
how to fix it?


##### ERROR ------------------------------------------------------------------------------------------
##### ERROR stack trace
java.lang.IllegalArgumentException: Unrecognized sequence: 1:0-0
	at org.broadinstitute.sv.queue.ComputeDiscoveryPartitions.computePartitions(ComputeDiscoveryPartitions.java:96)
	at org.broadinstitute.sv.qscript.SVQScript.computeDiscoveryPartitions(SVQScript.q:132)
	at SVDiscovery.script(SVDiscovery.q:19)
	at org.broadinstitute.sting.queue.QCommandLine$$anonfun$execute$1.apply(QCommandLine.scala:46)
	at org.broadinstitute.sting.queue.QCommandLine$$anonfun$execute$1.apply(QCommandLine.scala:43)
	at scala.collection.Iterator$class.foreach(Iterator.scala:631)
	at scala.collection.JavaConversions$JIteratorWrapper.foreach(JavaConversions.scala:549)
	at scala.collection.IterableLike$class.foreach(IterableLike.scala:79)
	at scala.collection.JavaConversions$JListWrapper.foreach(JavaConversions.scala:596)
	at org.broadinstitute.sting.queue.QCommandLine.execute(QCommandLine.scala:43)
	at org.broadinstitute.sting.commandline.CommandLineProgram.start(CommandLineProgram.java:239)
	at org.broadinstitute.sting.queue.QCommandLine$.main(QCommandLine.scala:117)
	at org.broadinstitute.sting.queue.QCommandLine.main(QCommandLine.scala)
##### ERROR ------------------------------------------------------------------------------------------
##### ERROR A GATK RUNTIME ERROR has occurred (version 1.0.5039M):
##### ERROR
##### ERROR Please visit to wiki to see if this is a known problem
##### ERROR If not, please post the error, with stack trace, to the GATK forum
##### ERROR Visit our wiki for extensive documentation
http://www.broadinstitute.org/gsa/wiki
##### ERROR Visit our forum to view answers to commonly asked
questions http://getsatisfaction.com/gsa
##### ERROR
##### ERROR MESSAGE: Unrecognized sequence: 1:0-0
##### ERROR ------------------------------------------------------------------------------------------