[svtoolkit-help] problem running genome strip

[Linda H. <li...@we...>]

Hi,

Im trying to run genome strip SVdiscovery on 9 bam files to look for 
deletions in a particular region of chromosome 14. However when I run 
the program I get the following error:

INFO 11:45:57,665 SVDiscovery - Processing cluster 
chr14:106783666-106786180 chr14:106810874-106812753 LR 35
#DBG: RC Cache fill chr14:106776181-106876180 100000 9 0.349954 sec
Error: Exception processing cluster: Permitted to write any record 
upstream of position 106788832, but a record at chr14:106786183 was just 
added.
Cluster: chr14:106783666-106786180 chr14:106810874-106812753 LR 35
INFO 11:45:59,342 GATKRunReport - Aggregating data for run report
[GC 309491K->25036K(819712K), 0.0030080 secs]
[Full GC 25036K->24617K(819712K), 0.0708550 secs]
##### ERROR 
------------------------------------------------------------------------------------------
##### ERROR stack trace

Do you have any idea what could be causing the error?

many thanks,

Linda