[svtoolkit-help] Filter criteria for SVs

[Hyun Ji N. <no...@br...>]

Hi,

Now I have vcf files that are generated by modified discovery.sh script. There's huge amount of information in the vcf files and there are even deletion calls that are not in my target region. So I'm wondering what is your recommended criteria to filter high quality deletion calls?

BW,
Hyun Ji

P.S. Thank you for you help on mismatched read pair records error. Your advice fixed the problem!