Re: [svtoolkit-help] genome mask files

[Bob H. <han...@br...>]

Hi, Mark,
I apologize for the tardy response - due to a configuration problem, I 
wasn't receiving these emails.
It sounds like you visited the web site when it was still under 
construction, the link to the genome mask files should be working now.
-Bob

*[svtoolkit-help] genome mask files 
<http://sourceforge.net/mailarchive/message.php?msg_id=27019976>*
From: Mark Cowley <m.cowley@ga...> - 2011-02-07 06:28

*Attachments:* Message as HTML 
<http://sourceforge.net/mailarchive/attachment.php?list_name=svtoolkit-help&message_id=89F21640-FFCD-4C6C-994A-C85B236A907E%40garvan.org.au&counter=1> 


Hi,
I saw the 1KG SV Nature paper&  I would like to run the genome STRiP algo on some cancer data that i've generated.
Installation went fairly smoothly, but i'm looking here:https://www.broadinstitute.org/gsa/wiki/index.php/Genome_STRiP_Genome_Mask_Files
and the link to precomputed mask files is dead&  I can't see a 'ComputeGenomeMask' cmdline util in the svtoolkit dir.

Can you please let me know how i can find these?

cheers,
Mark


-----------------------------------------------------
Mark Cowley, PhD

Garvan Cancer Program&  Peter Wills Bioinformatics Centre
Garvan Institute of Medical Research, Sydney, Australia
-----------------------------------------------------