svdetectcnv.sh

shell script to run SVDetect with baseline adjustment

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Last Update: 2019-10-05

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svdetectcnv.sh is a shell script to run SVDetect CNV mode. In addition to the original outputs of SVDetect, the script also outputs an adjusted bed.graph with baseline adjusted to the average Log2Ratio of a certain chromosome or all chromosomes, and a sorted density file.
**Update***
New version uses the splitted bam produced by exome_test.sh and allows for multithreading to split bam.

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