Knox committed [54b561]

Modified to meet TCBB revisions required

Knox committed [c91b24]

Modified to meet TCBB revisions required

Knox committed [3ccaa2]

Modifed scripts to use paths

Knox committed [702f04]

Added note about JVM memory size for DIZZY

Knox committed [910829]

Updates for consistency and added version into ...

Knox committed [05587a]

Updated Tutorial with suggested edits.

Knox committed [c4c936]

Added new files

Knox committed [5ce5aa]

Updated source and documentation to match manus...

david knox committed [6cf574]

Initial commit

Stochastic Rule Builder (SRB) released /DATA/GeneSorted.txt

Stochastic Rule Builder (SRB) released /DATA/GeneExpression.txt

Stochastic Rule Builder (SRB) released /DATA/GenePromoter.txt

Stochastic Rule Builder (SRB) released /DATA/Makefile

Stochastic Rule Builder (SRB) released /DATA/Expression_sorted.txt

Stochastic Rule Builder (SRB) released /DATA/GeneTFList.txt

Stochastic Rule Builder (SRB) released /DATA/GeneChrSizes.txt

Stochastic Rule Builder (SRB) released /DATA/GeneCounts.txt

Stochastic Rule Builder (SRB) released /DATA/GenePromoter.gff3

Stochastic Rule Builder (SRB) released /DATA/GeneNames.txt

Stochastic Rule Builder (SRB) released /DATA/GeneAnnotations.txt

Stochastic Rule Builder (SRB) released /DATA/in_vitro_nucleosome_dinucleotide_probs.txt

Stochastic Rule Builder (SRB) released /DATA/GeneAttr.txt

Stochastic Rule Builder (SRB) released /bin/KnoxUtils.py

Stochastic Rule Builder (SRB) released /bin/CorrelateData.R

Stochastic Rule Builder (SRB) released /bin/SubmitJob.sh

Stochastic Rule Builder (SRB) released /bin/PlotData.R

Stochastic Rule Builder (SRB) released /bin/Gene_Test_Params.py

Stochastic Rule Builder (SRB) released /bin/FilterGenes.py

Stochastic Rule Builder (SRB) released /bin/Sub_make.sh

Stochastic Rule Builder (SRB) released /bin/PlotExpression.R

Stochastic Rule Builder (SRB) released /bin/LookupRegulationOf.py

Stochastic Rule Builder (SRB) released /bin/ConvertGeneAnnotations.py

Stochastic Rule Builder (SRB) released /bin/NucleosomeTracks.py

Stochastic Rule Builder (SRB) released /bin/CorrelateTests.R

Stochastic Rule Builder (SRB) released /bin/Rplots.pdf

Stochastic Rule Builder (SRB) released /bin/ConvertYeastProteinCounts.py

Stochastic Rule Builder (SRB) released /bin/ConvertGeneTFList.py

Stochastic Rule Builder (SRB) released /bin/BuildTestScript.py

Stochastic Rule Builder (SRB) released /bin/BuildMotifAttr.py

Stochastic Rule Builder (SRB) released /bin/BuildPromoterRegion.py

Stochastic Rule Builder (SRB) released /bin/BuildGeneExpression.py

Stochastic Rule Builder (SRB) released /bin/BuildGeneExpression2.py

Stochastic Rule Builder (SRB) released /bin/AnalyzeSimulation.py

Stochastic Rule Builder (SRB) released /Sub_make.sh

Stochastic Rule Builder (SRB) released /Rplots.pdf

Stochastic Rule Builder (SRB) released /SubmitJob.sh

Stochastic Rule Builder (SRB) released /CorrelateData.R

Stochastic Rule Builder (SRB) released /LookupRegulationOf.py

Stochastic Rule Builder (SRB) released /NucleosomeTracks.py

Stochastic Rule Builder (SRB) released /KnoxUtils.py

Stochastic Rule Builder (SRB) released /ConvertYeastProteinCounts.py

Stochastic Rule Builder (SRB) released /Convert2YeastID.py

Stochastic Rule Builder (SRB) released /BuildTestScript.py

Stochastic Rule Builder (SRB) released /BuildPromoterRegion.py

Stochastic Rule Builder (SRB) released /BuildGeneExpression.py

Stochastic Rule Builder (SRB) released /SRB.py

Stochastic Rule Builder (SRB) released /CorrelateTests.R

Stochastic Rule Builder (SRB) released /ConvertGeneTFList.py

Stochastic Rule Builder (SRB) released /ConvertGeneAnnotations.py

Stochastic Rule Builder (SRB) released /PlotExpression.R

Stochastic Rule Builder (SRB) released /Gene_Test_Params.py

Stochastic Rule Builder (SRB) released /FilterGenes.py

Stochastic Rule Builder (SRB) released /BuildMotifAttr.py

Stochastic Rule Builder (SRB) released /BuildGeneExpression2.py

Stochastic Rule Builder (SRB) released /AnalyzeSimulation.py

David Knox created a blog post

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