in the gap5 template plot I see colors not mentioned in the manual (nor in the publication) and I was wondering about their meaning.
Namely these are:
"pale" yellow or "peach"(?)
pink, different intensities
and maybe others I have overseen.
I have configured the template track to show "Template Size" and "Combined Mapping Quality". "Y-log-scale" and "Avg. Insert Size" are "ticked.
This is probably sth. obvious ... any hints?
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