Sven Klages - 2013-11-06

Hi,

in the gap5 template plot I see colors not mentioned in the manual (nor in the publication) and I was wondering about their meaning.

Namely these are:
yellow
light green
dark green
magenta
"pale" yellow or "peach"(?)
pink, different intensities
cyan
light blue

and maybe others I have overseen.

I have configured the template track to show "Template Size" and "Combined Mapping Quality". "Y-log-scale" and "Avg. Insert Size" are "ticked.

This is probably sth. obvious ... any hints?

thanks,
Sven