sghignone - 2007-09-07

After having been an enthusiastic user of StadenPackage + phred/phrap on 32-bit environment, I recently moved on 64-bit environment. Now come the troubles...Even if everything seems to be ok with the main program installation (on a Ubuntu workstation and a Rocks 16 cpus cluster), I cannot get gcphrap working, and the assembly stops after the crossmatch step in the pregap4 assembly process.
Is there something I should know to compile in the right way phrap on the 64-bit environment?
(I already changed the CC value in the makefile to CC= gcc-3.4: seems to be the only compiler that works without too many errors...)
Thanks in advance, and sorry if this is not the right forum to post my question.
Cheers from Turin, Italy

Stefano Ghignone

Istituto per la Protezione delle Piante, Sez. Torino - CNR
c/o Dpt. Plant Biology, University of Turin
V.le P.A. Mattioli, 25
I-10125 Turin
Italy
Phone: +39 011 6705951
Fax: +39 011 6705962
e-mail: stefano.ghignone_at_unito.it

http://www.bioveg.unito.it
http://www.sppadbase.com
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