#55 make gcphrap fails with phrap_extras-1.3

v1.6.0
closed-fixed
None
5
2005-10-27
2005-10-25
culloden
No

Make outputs the following:

gcc -O2 -c -o gcphrap.o phrap.c -DGCPHRAP
gcc -O2 -c -o contigs.o contigs.c
gcc -O2 -c -o tig_node.o tig_node.c
gcc -O2 -c -o readin.o readin.c
gcc -O2 -c -o words.o words.c
gcc -O2 -c -o segments.o segments.c
gcc -O2 -c -o recursive_swat.o recursive_swat.c
gcc -O2 -c -o log_file.o log_file.c
gcc -O2 -c -o pairs.o pairs.c
gcc -O2 -c -o cand_pairs.o cand_pairs.c
gcc -O2 -c -o diffs.o diffs.c
gcc -O2 -c -o names.o names.c
gcc -O2 -c -o nodes.o nodes.c
gcc -O2 -c -o anomalies.o anomalies.c
gcc -O2 -c -o qual.o qual.c
gcc -O2 -c -o tags.o tags.c
gcc -O2 -c -o alignments.o alignments.c
gcc -O2 -c -o db.o db.c
gcc -O2 -c -o smith_wat.o smith_wat.c
gcc -O2 -c -o full_smith_wat.o smith_wat.c -
DFINDALIGN
gcc -O2 -c -o quick_smith_wat.o smith_wat.c -
DQUICKALIGN
gcc -O2 -c -o utilities.o utilities.c
gcc -O2 -c -o nw.o nw.c
gcc -O2 -c -o full_nw.o nw.c -DFINDALIGN
gcc -O2 -c -o profile.o profile.c
gcc -O2 -c -o parameters.o parameters.c
gcc -O2 -c -o exp_file.o exp_file.c
iexp_file.c: In function `add_exp_sequence':
exp_file.c:205: error: `seq_len' undeclared (first use in
this function)
exp_file.c:205: error: (Each undeclared identifier is
reported only once
exp_file.c:205: error: for each function it appears in.)
make: *** [exp_file.o] Error 1

Discussion

  • James Bonfield

    James Bonfield - 2005-10-27
    • assigned_to: nobody --> jkbonfield
    • status: open --> closed-fixed
     
  • James Bonfield

    James Bonfield - 2005-10-27

    Logged In: YES
    user_id=154581

    It's now been fixed in phrap extras 1.4. Sorry for this
    trivial bug.

    James

     

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