Recent changes to SPA

WikiPage SPA modified by bioinformatics

bioinformatics — Sun, 28 Oct 2012 14:51:14 -0000

--- v18
+++ v19
@@ -53,7 +53,7 @@
 ##Show the significant SNPs annoted in the gene "6546". 
 ShowDetailInfo(Results,PathwayID="hsa05212",EntrezGeneID="108") 
 ~~~~~~~~~~~~~~~
- [SamplePage].
+ [other].
 
 The wiki uses [Markdown](/p/spa-software/wiki/markdown_syntax/) syntax.

WikiPage Home modified by bioinformatics

bioinformatics — Sun, 28 Oct 2012 14:48:38 -0000

--- v17
+++ v18
@@ -19,8 +19,8 @@
 
 Functions:
 ------
+SPAhyper: Identifying disease or phenotype related pathways using the Hypergeometric test. 
 SPAfisher: Identifying disease or phenotype related pathways using the Fisher's exact test. 
-SPAhyper: Identifying disease or phenotype related pathways using the Hypergeometric test. 
 ShowTestResults: Show test results. 
 ShowDetailInfo: Show detailed information. 
 EnrichFisher: Fisher's exact test for SNP enrichment analysis. 
@@ -28,8 +28,6 @@
 KEGG2gene: KEGG to gene 
 KEGG_ID_name: KEGG pathway ID and pathway name 
 snp2KEGGgene: SNP to KEGG gene 
-
-
 
 Examples
 --------

WikiPage Home modified by bioinformatics

bioinformatics — Sun, 28 Oct 2012 14:46:44 -0000

--- v16
+++ v17
@@ -19,16 +19,16 @@
 
 Functions:
 ------
-SPA-package: SNP based Pathway Analysis 
+SPAfisher: Identifying disease or phenotype related pathways using the Fisher's exact test. 
+SPAhyper: Identifying disease or phenotype related pathways using the Hypergeometric test. 
+ShowTestResults: Show test results. 
+ShowDetailInfo: Show detailed information. 
 EnrichFisher: Fisher's exact test for SNP enrichment analysis. 
 EnrichHyper: Hypergeometric test for SNP enrichment analysis. 
 KEGG2gene: KEGG to gene 
 KEGG_ID_name: KEGG pathway ID and pathway name 
-ShowDetailInfo: Show detailed information. 
-ShowTestResults: Show test results. 
 snp2KEGGgene: SNP to KEGG gene 
-SPAfisher: Identifying disease or phenotype related pathways using the Fisher's exact test. 
-SPAhyper: Identifying disease or phenotype related pathways using the Hypergeometric test. 
+
 
 
 Examples

WikiPage Home modified by bioinformatics

bioinformatics — Sun, 28 Oct 2012 14:43:52 -0000

--- v15
+++ v16
@@ -7,7 +7,7 @@
 
 Maintainer: 
 --------
-Yongshuai Jiang:     Guiyou Liu: 
+Yongshuai Jiang:   ;  Guiyou Liu: 
 
 Download:
 --------
@@ -16,6 +16,19 @@
 

 

 Example data (snp2p.txt): http://sourceforge.net/projects/spa-software/files/snp2p.rar/download
+
+Functions:
+------
+SPA-package: SNP based Pathway Analysis 
+EnrichFisher: Fisher's exact test for SNP enrichment analysis. 
+EnrichHyper: Hypergeometric test for SNP enrichment analysis. 
+KEGG2gene: KEGG to gene 
+KEGG_ID_name: KEGG pathway ID and pathway name 
+ShowDetailInfo: Show detailed information. 
+ShowTestResults: Show test results. 
+snp2KEGGgene: SNP to KEGG gene 
+SPAfisher: Identifying disease or phenotype related pathways using the Fisher's exact test. 
+SPAhyper: Identifying disease or phenotype related pathways using the Hypergeometric test. 
 
 
 Examples

WikiPage Home modified by bioinformatics

bioinformatics — Sun, 28 Oct 2012 14:38:09 -0000

--- v14
+++ v15
@@ -7,7 +7,7 @@
 
 Maintainer: 
 --------
-Yongshuai Jiang or Guiyou Liu
+Yongshuai Jiang:     Guiyou Liu: 
 
 Download:
 --------

WikiPage Home modified by bioinformatics

bioinformatics — Sun, 28 Oct 2012 14:37:05 -0000

--- v13
+++ v14
@@ -4,6 +4,10 @@
 Description:
 --------
 SPA is an R package which can identify disease or phenotype related pathways. Input rs# and GWAS test p-values, you can get the related pathways. 
+
+Maintainer: 
+--------
+Yongshuai Jiang or Guiyou Liu
 
 Download:
 --------

WikiPage Home modified by bioinformatics

bioinformatics — Sun, 28 Oct 2012 14:33:44 -0000

--- v12
+++ v13
@@ -1,7 +1,11 @@
 SPA - SNP based pathway analysis
 ========
 
-Download SPA software and emxample data:
+Description:
+--------
+SPA is an R package which can identify disease or phenotype related pathways. Input rs# and GWAS test p-values, you can get the related pathways. 
+
+Download:
 --------
 SPA software: http://sourceforge.net/projects/spa-software/files/SPA_1.0.tar.gz/download
  [[download_button]]

WikiPage Home modified by bioinformatics

bioinformatics — Sun, 28 Oct 2012 14:30:30 -0000

--- v11
+++ v12
@@ -5,10 +5,6 @@
 --------
 SPA software: http://sourceforge.net/projects/spa-software/files/SPA_1.0.tar.gz/download
  [[download_button]] 
-
-
-
-

 

 

 Example data (snp2p.txt): http://sourceforge.net/projects/spa-software/files/snp2p.rar/download

WikiPage Home modified by bioinformatics

bioinformatics — Sun, 28 Oct 2012 14:29:43 -0000

--- v10
+++ v11
@@ -8,8 +8,10 @@
 
 
 
-

-Example data: http://sourceforge.net/projects/spa-software/files/snp2p.rar/download
+

+

+

+Example data (snp2p.txt): http://sourceforge.net/projects/spa-software/files/snp2p.rar/download
 
 
 Examples

WikiPage Home modified by bioinformatics

bioinformatics — Sun, 28 Oct 2012 14:28:24 -0000

--- v9
+++ v10
@@ -1,10 +1,13 @@
-Welcome to SPA!
+SPA - SNP based pathway analysis
 ========
 
 Download SPA software and emxample data:
 --------
 SPA software: http://sourceforge.net/projects/spa-software/files/SPA_1.0.tar.gz/download
  [[download_button]] 
+
+
+
 

 Example data: http://sourceforge.net/projects/spa-software/files/snp2p.rar/download