Hello,
There seems to be no sequence ontology for Overexpression or Underexpression for variant trasncripts.
Overexpression of a transcript is a variant such that the amino acids of the trasncript are expressed more than others, despite all illustrated equally. In other words, it is a processing error due to the state of the other variants in the transcript.
Underexpression of a trasncript is a variant such that the amino acids of the trasncript are expressed less than others, despite all illustrated equally. In other words, it is a processing error due to the state of the other variants in the transcript.
Would you please add the two.
Thank you for your time,
Lynzey
Hi
We have moved this tracker to the github site as the sourceforge is being retired.
https://github.com/The-Sequence-Ontology/SO-Ontologies/issues
Your term requests look good and I will comment on github as I work on them
Cheers
Karen.
I think this is a molecular phenotype of the transcript isoform/gene and
not a sequence ontology feature. Reason is that it was measured based on
some observed value of # of aligned reads (RNA-Seq) or intensity of the
spot (microarray).
Pankaj
On 10/26/2015 10:15 AM, Karen Eilbeck wrote:
--
Pankaj Jaiswal, PhD
Associate Professor
Dept. of Botany and Plant Pathology
2082 Cordley Hall
Oregon State University
Corvallis, OR, 97331
USA
Ph.: +1-541-737-8471
Fax: +1-541-737-3573
email: jaiswalp@oregonstate.edu
Web: http://jaiswallab.cgrb.oregonstate.edu/
Related
Term Tracker -deprecated go to git hub: #437
And the over/under expression is in comparison to some reference and
dependent on Genotype x Environment x Management/experiment-setup.
Pankaj
On 10/26/2015 12:27 PM, Jaiswal, Pankaj - OSU wrote:
--
Pankaj Jaiswal, PhD
Associate Professor
Dept. of Botany and Plant Pathology
2082 Cordley Hall
Oregon State University
Corvallis, OR, 97331
USA
Ph.: +1-541-737-8471
Fax: +1-541-737-3573
email: jaiswalp@oregonstate.edu
Web: http://jaiswallab.cgrb.oregonstate.edu/
Related
Term Tracker -deprecated go to git hub: #437