To allow for the classification of a non-genomic coding/pseudogenic gene structure.
I guess these would have to be child terms of CDS and also child terms of LTR_transposons and other classes that have coding potential.
I think understood your request. You want to annotate the CDS portion of a gene within a transposable element, and likewise for a pseudogene.
I made these cross product terms.
I'll check them in shortly.
If this is not what you want, let me know.
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