#4 Test Dataset Regression Tests
We need to create a regression test for each processing method we support in the pipeline:
* genomic sequencing (done)
* cDNA sequencing
* digital gene expression (both types)
* ChIP-Seq
* methylatation detection
* small RNA sequencing
* any others that come up
* paired end genomic sequence (two runs)
* a tagged genomic sequencing run
* a genomic sequencing run with targeted alignment
The basic idea is that 10-20 tiles from one lane of each of the above are used to create a small test dataset. These are then run through the pipeline and the resulting reports are compared to a known good output. This will let us test the pipeline in a standalone way before new methods are pushed out to production. This test is triggered by a "make testrun".
Discussion
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Please add the "make testrun" target and test each of the methods above after you've created the test datasets.
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You have created all but the following test datasets: hs_targeted_genomic_sample, hs_tagged_genomic_sample, hs_small_rna_sample. Please create these ASAP.