#10 UCSC Mirroring Script

[Brian O'Connor]

Need to continue to implement on syncing script to do bfast files and all the report annotation files. These are used in reporting. Examples: Coordinate_overlap_scanner.pl and things that call it.

In mirror script, need to generate files for each chromosome which will be needed for reports, containing the number of positions in that chromosome.
chr1.count
chr2.count
...