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WikiPage Home modified by Brian Ondov

Brian Ondov — Mon, 02 Apr 2012 21:20:46 -0000

--- v2 
+++ v3 
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 SOCS is a mapping tool for SOLiD (color space) sequencing reads that supports bisulfite transformation for 5mC methylation studies. When run in bisulfite mode, alignments are tolerant of any number of bisulfite-induced nucleotide substitutions, allowing for unbiased alignment to standard reference sequences (without pre-conversion).  See "Variant mode" in the [Options](http://socs.sourceforge.net/Usage.html#options) section of the [Usage](http://socs.sourceforge.net/Usage.html) document for more details.
 
-####Publications####
+#####Help#####
+- [Usage information](http://socs.sourceforge.net/Usage.html)
+- [Updates](https://sourceforge.net/p/socs/blog/)
+- [Discussion](https://sourceforge.net/p/socs/discussion/)
+- [Issues](https://sourceforge.net/p/socs/tickets/)
+
+#####Publications#####
 - Ondov BD, Cochran C, Landers M, Meredith GD, Dudas M, Bergman NH.  An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System.  Bioinformatics  2010 Aug 1;26(15):1901-2. [Full text](http://bioinformatics.oxfordjournals.org/cgi/reprint/btq291)
 - Ondov BD, Varadarajan A, Passalacqua KD, Bergman NH. Efficient mapping of ABI SOLiD sequence data to a reference genome for functional genomic applications. Bioinformatics  2008 Dec 1;24(23):2776-7. [Full text](http://bioinformatics.oxfordjournals.org/cgi/reprint/btn512)

WikiPage Home modified by Brian Ondov

Brian Ondov — Mon, 02 Apr 2012 20:35:53 -0000

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+++ v2 
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-Welcome to your wiki!
-
-This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].
-
-The wiki uses [Markdown](/p/socs/wiki/markdown_syntax/) syntax.
-
-[[project_admins]]
-[[download_button]]
+SOCS is a mapping tool for SOLiD (color space) sequencing reads that supports bisulfite transformation for 5mC methylation studies. When run in bisulfite mode, alignments are tolerant of any number of bisulfite-induced nucleotide substitutions, allowing for unbiased alignment to standard reference sequences (without pre-conversion).  See "Variant mode" in the [Options](http://socs.sourceforge.net/Usage.html#options) section of the [Usage](http://socs.sourceforge.net/Usage.html) document for more details.
+
+####Publications####
+- Ondov BD, Cochran C, Landers M, Meredith GD, Dudas M, Bergman NH.  An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System.  Bioinformatics  2010 Aug 1;26(15):1901-2. [Full text](http://bioinformatics.oxfordjournals.org/cgi/reprint/btq291)
+- Ondov BD, Varadarajan A, Passalacqua KD, Bergman NH. Efficient mapping of ABI SOLiD sequence data to a reference genome for functional genomic applications. Bioinformatics  2008 Dec 1;24(23):2776-7. [Full text](http://bioinformatics.oxfordjournals.org/cgi/reprint/btn512)

WikiPage Home modified by Brian Ondov

Brian Ondov — Mon, 02 Apr 2012 15:31:59 -0000

Welcome to your wiki! This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage]. The wiki uses [Markdown](/p/socs/wiki/markdown_syntax/) syntax. [[project_admins]] [[download_button]]