SOCS performs ungapped alignment of SOLiD (color space) sequencing reads against reference sequences. Modes are available for detecting short sequence-space variants (such as SNPs) and for detecting unlimited numbers of bisulfite-induced nucleotide substitutions for 5mC methylation studies.

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Categories

Bio-Informatics

License

GNU General Public License version 3.0 (GPLv3)

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Additional Project Details

Operating Systems

Linux, BSD

Intended Audience

Science/Research

User Interface

Console/Terminal, Command-line

Programming Language

C++

Related Categories

C++ Bio-Informatics Software

Registered

2012-04-02
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