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Shengchang Gu luoxuefeng1

SOAPstreaming

SOAPstreaming, a flexible hadoop-based framework for systematically analyzing large scale NGS data. SOAPstreaming uses an enhanced Hadoop streaming strategy of MapReduce model to parallelize tools, which offers great scalability and efficiently reduces running time of large NGS datasets. Moreover, it has nice expansion capability to integrate new tools for different analysis needs, which more and more tools will be added in this framework.

SOAPstreaming-BWA

SOAPstreaming-Bowtie

SOAPstreaming-Dindel

SOAPstreaming-LastZ

SOAPstreaming-Mpileup

SOAPstreaming-SOAP2

SOAPstreaming-SOAPsnp

SOAPstreaming-Streaming