soaplab-users

[Soaplab-users] CVS Build - Installation problem

[Shameer K. <sh...@nc...>]

Hi All,

I am new to the list. We have a couple of command line programs developed
in the lab. We are planning to provide them as Web service for public use.
I hope I can use SoapLab to get it done.

I downloaded the source from CVS. When I tried to build it  got the
following error.

 ./build.sh Buildfile: build.xml

gather:
      [get] Getting: http://soaplab.sf.net/jar-storage/alltools.jar
      [get] Error getting http://soaplab.sf.net/jar-storage/alltools.jar
to /home/shameer/soaplab/lib/alltools.jar

BUILD FAILED
file:/home/shameer/soaplab/build.xml:152: java.net.ConnectException:
Connection timed out

Total time: 3 minutes 10 seconds
Buildfile: build.xml

init:

compile:

BUILD FAILED
file:/home/shameer/soaplab/build.xml:350:
       Missing one or more third-party libraries.
       Try to run build.sh or build.bat to fetch them from the net.


Total time: 0 seconds

Please Help,
Thanks,
-- 
K. Shameer
Lab (# 25) The Computational Biology Group
National Centre for Biological Sciences (TIFR)
GKVK Campus, Bellary Road, Bangalore - 65, Karnataka - India
T - 91-080-23666001 EXT - 6251
W - http://www.ncbs.res.in

Re: [Soaplab-users] CVS Build - Installation problem

[Martin S. <mar...@gm...>]

Hi,

We have a couple of command line programs developed
> in the lab. We are planning to provide them as Web service for public use.
> I hope I can use SoapLab to get it done.


I hope, too :-)

But I definitely recommend you to go for Soaplab2 - it is a newer, recently
released, version of Soaplab with much easier deployment, better
documentation and much cleaner code. Also the problem you mentioned will not
happened (because the library that timeout-ed for you is now taken from a
different place).

You can find Soaplab2 at http://soaplab.sourceforge.net/soaplab2.

Regards,
Martin

-- 
Martin Senger
  email: mar...@gm...
  skype: martinsenger

Re: [Soaplab-users] CVS Build - Installation problem

[Shameer K. <sh...@nc...>]

Hi Martin,

Thanks for your quick reply. I got the code from CVS, I am getting similar
errors. I am on an ubuntu box. I have executed export http_proxy command
to bypass proxy related issues.

~/soaplab2$ ant install
Unable to locate tools.jar. Expected to find it in
/usr/lib/j2se/1.4/lib/tools.jar
Buildfile: build.xml

install:
  [welcome]
  [welcome] ------------------------------------------
  [welcome] Welcome to the Soaplab2 world.           |
  [welcome] Project documentation is available from: |
  [welcome] http://soaplab.sourceforge.net/soaplab2/ |
  [welcome]                                          |
  [welcome] ( If you are interested only in Soaplab2 |
  [welcome]   clients, stop this by Ctrl-C and start |
  [welcome]   again with 'ant install-clients'. )    |
  [welcome] ------------------------------------------
  [welcome]

  [version]
  [version] Apache Ant version 1.6.5 compiled on July 5 2006
  [version] Java: 1.4.2-02
  [version] Linux 2.6.20-16-generic
  [version]

check-ant-version:

bootstrap:
      [get] Getting:
http://apache.hoxt.com/maven/binaries/maven-ant-tasks-2.0.8.jar
      [get] To: /home/shameer/soaplab2/lib/maven-ant-tasks-2.0.8.jar
      [get] Error getting
http://apache.hoxt.com/maven/binaries/maven-ant-tasks-2.0.8.jar to
/home/shameer/soaplab2/lib/maven-ant-tasks-2.0.8.jar

BUILD FAILED
/home/shameer/soaplab2/xmls/install.xml:32: The following error occurred
while executing this line:
/home/shameer/soaplab2/xmls/maven.xml:48: java.net.ConnectException:
Connection timed out

Total time: 3 minutes 10 seconds



>
> But I definitely recommend you to go for Soaplab2 - it is a newer,
> recently  released, version of Soaplab with much easier deployment, better
> documentation and much cleaner code. Also the problem you mentioned will
> not happened (because the library that timeout-ed for you is now taken
> from a different place).
>

-- 
K. Shameer
Lab (# 25) The Computational Biology Group
National Centre for Biological Sciences (TIFR)
GKVK Campus, Bellary Road, Bangalore - 65, Karnataka - India
T - 91-080-23666001 EXT - 6251
W - http://www.ncbs.res.in

Re: [Soaplab-users] CVS Build - Installation problem

[Marc L. <Mar...@ab...>]

Hi,
Does a wget
http://apache.hoxt.com/maven/binaries/maven-ant-tasks-2.0.8.jar work ?
If not, my guess is that you are sitting behind a proxy. If that is the
case you might find a solution here:
http://ant.apache.org/manual/proxy.html
HTH,
Marc

> -----Original Message-----
> From: soa...@li...
[mailto:soaplab-users-
> bo...@li...] On Behalf Of Shameer Khadar
> Sent: dinsdag 12 februari 2008 9:44
> To: soa...@li...
> Cc: Martin Senger
> Subject: Re: [Soaplab-users] CVS Build - Installation problem
> 
> Hi Martin,
> 
> Thanks for your quick reply. I got the code from CVS, I am getting
similar
> errors. I am on an ubuntu box. I have executed export http_proxy
command
> to bypass proxy related issues.
> 
> ~/soaplab2$ ant install
> Unable to locate tools.jar. Expected to find it in
> /usr/lib/j2se/1.4/lib/tools.jar
> Buildfile: build.xml
> 
> install:
>   [welcome]
>   [welcome] ------------------------------------------
>   [welcome] Welcome to the Soaplab2 world.           |
>   [welcome] Project documentation is available from: |
>   [welcome] http://soaplab.sourceforge.net/soaplab2/ |
>   [welcome]                                          |
>   [welcome] ( If you are interested only in Soaplab2 |
>   [welcome]   clients, stop this by Ctrl-C and start |
>   [welcome]   again with 'ant install-clients'. )    |
>   [welcome] ------------------------------------------
>   [welcome]
> 
>   [version]
>   [version] Apache Ant version 1.6.5 compiled on July 5 2006
>   [version] Java: 1.4.2-02
>   [version] Linux 2.6.20-16-generic
>   [version]
> 
> check-ant-version:
> 
> bootstrap:
>       [get] Getting:
> http://apache.hoxt.com/maven/binaries/maven-ant-tasks-2.0.8.jar
>       [get] To: /home/shameer/soaplab2/lib/maven-ant-tasks-2.0.8.jar
>       [get] Error getting
> http://apache.hoxt.com/maven/binaries/maven-ant-tasks-2.0.8.jar to
> /home/shameer/soaplab2/lib/maven-ant-tasks-2.0.8.jar
> 
> BUILD FAILED
> /home/shameer/soaplab2/xmls/install.xml:32: The following error
occurred
> while executing this line:
> /home/shameer/soaplab2/xmls/maven.xml:48: java.net.ConnectException:
> Connection timed out
> 
> Total time: 3 minutes 10 seconds
> 
> 
> 
> >
> > But I definitely recommend you to go for Soaplab2 - it is a newer,
> > recently  released, version of Soaplab with much easier deployment,
> better
> > documentation and much cleaner code. Also the problem you mentioned
will
> > not happened (because the library that timeout-ed for you is now
taken
> > from a different place).
> >
> 
> --
> K. Shameer
> Lab (# 25) The Computational Biology Group
> National Centre for Biological Sciences (TIFR)
> GKVK Campus, Bellary Road, Bangalore - 65, Karnataka - India
> T - 91-080-23666001 EXT - 6251
> W - http://www.ncbs.res.in
> 
> 
>
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> https://lists.sourceforge.net/lists/listinfo/soaplab-users

Re: [Soaplab-users] CVS Build - Installation problem

[Shameer K. <sh...@nc...>]

Hi,

Yes, wget is working after I do an export http_proxy="myproxy:port".

wget http://apache.hoxt.com/maven/binaries/maven-ant-tasks-2.0.8.jar
--16:16:43--  http://apache.hoxt.com/maven/binaries/maven-ant-tasks-2.0.8.jar
           => `maven-ant-tasks-2.0.8.jar'
Resolving proxy.ncbs.res.in... 192.168.1.1
Connecting to proxy.ncbs.res.in|192.168.1.1|:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 9,80,760 (958K) [text/plain]

100%[====================================>] 9,80,760      --.--K/s

16:16:43 (7.71 MB/s) - `maven-ant-tasks-2.0.8.jar' saved [980760/980760]

Without export http_proxy it is not working. I executed same command
before building the CVS code as well.




> Hi,
> Does a wget
> http://apache.hoxt.com/maven/binaries/maven-ant-tasks-2.0.8.jar work ?
> If not, my guess is that you are sitting behind a proxy. If that is the
> case you might find a solution here:
> http://ant.apache.org/manual/proxy.html
> HTH,
> Marc
>

-- 
K. Shameer
Lab (# 25) The Computational Biology Group
National Centre for Biological Sciences (TIFR)
GKVK Campus, Bellary Road, Bangalore - 65, Karnataka - India
T - 91-080-23666001 EXT - 6251
W - http://www.ncbs.res.in

Re: [Soaplab-users] CVS Build - Installation problem

[Shameer K. <sh...@nc...>]

> If not, my guess is that you are sitting behind a proxy. If that is the
> case you might find a solution here:
> http://ant.apache.org/manual/proxy.html

I am not able to access this URL : http://ant.apache.org/manual/proxy.html
Are you guys able to access it ? I think I should talk to our systems
engineer to know more about the proxy restrictions.

:)


-- 
K Shameer
Lab (# 25) The Computational Biology Group
National Centre for Biological Sciences (TIFR)
GKVK Campus, Bellary Road, Bangalore - 65, Karnataka - India
T - 91-080-23666001 EXT - 6251
W - http://www.ncbs.res.in

Re: [Soaplab-users] CVS Build - Installation problem

[Mahmut U. <ul...@eb...>]

On Tue, 2008-02-12 at 16:46 +0530, Shameer Khadar wrote:
> 
> > If not, my guess is that you are sitting behind a proxy. If that is the
> > case you might find a solution here:
> > http://ant.apache.org/manual/proxy.html
> 
> I am not able to access this URL : http://ant.apache.org/manual/proxy.html
> Are you guys able to access it ?

Yes, I can access from the EBI.

-- mahmut

>  I think I should talk to our systems
> engineer to know more about the proxy restrictions.
> 
> :)