Thread: [Soaplab-users] soaplab2 plugin problems
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From: Sirisha G. <si...@my...> - 2009-08-03 09:28:03
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Hi everyone,
Is there a problem with the Soaplab2 Taverna plugin? This morning, I
started up Taverna (1.7) and noticed that the Plugin Manager was
reporting that an update was available. I guess I shouldn't have tried
to update, because now the option to add a new Soaplab2 scavenger is no
longer available :(
In the Plugin Manager, the "Taverna Soaplab Plugin" is listed (v
2.1.1.7-beta), but it's now saying that there are no up dates available.
I have tried disabling/re-enabling, as well as
uninstalling/reinstalling, but no joy.
I also got these messages in the terminal, which I haven't seen before,
so not sure if they are anything to do with the problem?
Aug 3, 2009 9:54:05 AM
net.sf.taverna.raven.repository.impl.LocalRepository ?
WARNING: Could not find artifact org.codehaus.woodstox:wstx-asl:3.2.4
net.sf.taverna.raven.repository.ArtifactNotFoundException: Can't find
artifact for: org.codehaus.woodstox:wstx-asl:3.2.4
at
net.sf.taverna.raven.repository.impl.LocalRepository.fetch(LocalRepository.java:727)
at
net.sf.taverna.raven.repository.impl.LocalRepository.act(LocalRepository.java:379)
at
net.sf.taverna.raven.repository.impl.LocalRepository.update(LocalRepository.java:262)
at net.sf.taverna.raven.Loader.doRavenMagic(Loader.java:138)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
net.sf.taverna.tools.Bootstrap.createWorkbenchClass(Bootstrap.java:240)
at net.sf.taverna.tools.Bootstrap.main(Bootstrap.java:71)
Aug 3, 2009 9:54:06 AM
net.sf.taverna.raven.repository.impl.LocalRepository ?
WARNING: Could not find artifact stax:stax-api:1.0.1
Anyone else experiencing the same?
Thanks,
Sirisha
This message has been checked for viruses but the contents of an attachment
may still contain software viruses, which could damage your computer system:
you are advised to perform your own checks. Email communications with the
University of Nottingham may be monitored as permitted by UK legislation.
|
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From: Mahmut U. <ul...@eb...> - 2009-08-03 10:48:11
|
Hi Sirisha, I have deleted the beta version of the plugin, it was previously working for me i don't know why it is now not able to find that particular dependency. If you uninstall and install your Soaplab plugin again it should work (using version 2.1.1.6). Regards, Mahmut On Mon, 2009-08-03 at 10:09 +0100, Sirisha Gollapudi wrote: > Hi everyone, > > Is there a problem with the Soaplab2 Taverna plugin? This morning, I > started up Taverna (1.7) and noticed that the Plugin Manager was > reporting that an update was available. I guess I shouldn't have tried > to update, because now the option to add a new Soaplab2 scavenger is no > longer available :( > > In the Plugin Manager, the "Taverna Soaplab Plugin" is listed (v > 2.1.1.7-beta), but it's now saying that there are no up dates available. > I have tried disabling/re-enabling, as well as > uninstalling/reinstalling, but no joy. > > I also got these messages in the terminal, which I haven't seen before, > so not sure if they are anything to do with the problem? > > > Aug 3, 2009 9:54:05 AM > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact org.codehaus.woodstox:wstx-asl:3.2.4 > net.sf.taverna.raven.repository.ArtifactNotFoundException: Can't find > artifact for: org.codehaus.woodstox:wstx-asl:3.2.4 > at > net.sf.taverna.raven.repository.impl.LocalRepository.fetch(LocalRepository.java:727) > at > net.sf.taverna.raven.repository.impl.LocalRepository.act(LocalRepository.java:379) > at > net.sf.taverna.raven.repository.impl.LocalRepository.update(LocalRepository.java:262) > at net.sf.taverna.raven.Loader.doRavenMagic(Loader.java:138) > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) > at java.lang.reflect.Method.invoke(Method.java:597) > at > net.sf.taverna.tools.Bootstrap.createWorkbenchClass(Bootstrap.java:240) > at net.sf.taverna.tools.Bootstrap.main(Bootstrap.java:71) > Aug 3, 2009 9:54:06 AM > net.sf.taverna.raven.repository.impl.LocalRepository ? > WARNING: Could not find artifact stax:stax-api:1.0.1 |
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From: Sirisha G. <si...@my...> - 2009-08-03 11:00:58
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Hi Mahmut, Thanks for that - but after uninstalling and restarting Taverna, when I add the plugin site (http://soaplab.sourceforge.net/taverna-plugin/) the only available plugin version is 2.1.1.7-beta - should I go ahead with that, or should it say the different version number? Thanks, Sirisha Mahmut Uludag wrote: > Hi Sirisha, > > I have deleted the beta version of the plugin, it was previously working > for me i don't know why it is now not able to find that particular > dependency. If you uninstall and install your Soaplab plugin again it > should work (using version 2.1.1.6). > > Regards, > Mahmut > > On Mon, 2009-08-03 at 10:09 +0100, Sirisha Gollapudi wrote: >> Hi everyone, >> >> Is there a problem with the Soaplab2 Taverna plugin? This morning, I >> started up Taverna (1.7) and noticed that the Plugin Manager was >> reporting that an update was available. I guess I shouldn't have tried >> to update, because now the option to add a new Soaplab2 scavenger is no >> longer available :( >> >> In the Plugin Manager, the "Taverna Soaplab Plugin" is listed (v >> 2.1.1.7-beta), but it's now saying that there are no up dates available. >> I have tried disabling/re-enabling, as well as >> uninstalling/reinstalling, but no joy. >> >> I also got these messages in the terminal, which I haven't seen before, >> so not sure if they are anything to do with the problem? >> >> >> Aug 3, 2009 9:54:05 AM >> net.sf.taverna.raven.repository.impl.LocalRepository ? >> WARNING: Could not find artifact org.codehaus.woodstox:wstx-asl:3.2.4 >> net.sf.taverna.raven.repository.ArtifactNotFoundException: Can't find >> artifact for: org.codehaus.woodstox:wstx-asl:3.2.4 >> at >> net.sf.taverna.raven.repository.impl.LocalRepository.fetch(LocalRepository.java:727) >> at >> net.sf.taverna.raven.repository.impl.LocalRepository.act(LocalRepository.java:379) >> at >> net.sf.taverna.raven.repository.impl.LocalRepository.update(LocalRepository.java:262) >> at net.sf.taverna.raven.Loader.doRavenMagic(Loader.java:138) >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >> at >> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) >> at >> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) >> at java.lang.reflect.Method.invoke(Method.java:597) >> at >> net.sf.taverna.tools.Bootstrap.createWorkbenchClass(Bootstrap.java:240) >> at net.sf.taverna.tools.Bootstrap.main(Bootstrap.java:71) >> Aug 3, 2009 9:54:06 AM >> net.sf.taverna.raven.repository.impl.LocalRepository ? >> WARNING: Could not find artifact stax:stax-api:1.0.1 > > This message has been checked for viruses but the contents of an attachment may still contain software viruses, which could damage your computer system: you are advised to perform your own checks. Email communications with the University of Nottingham may be monitored as permitted by UK legislation. |
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From: Mahmut U. <ul...@eb...> - 2009-08-03 14:22:24
|
Hi Sirisha, > after uninstalling and restarting Taverna, when I > add the plugin site (http://soaplab.sourceforge.net/taverna-plugin/) the > only available plugin version is 2.1.1.7-beta - should I go ahead with > that, or should it say the different version number? yes it should, looks like there is some caching? just to be make sure i now also deleted the plugin definition, last time i only delete it from the available plugins list (when testing here taverna didn't see it so i was reluctant to delete it completely, i don't know why taverna still sees it in your case). Can you please try again? Mahmut |
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From: Sirisha G. <si...@my...> - 2009-08-03 11:18:06
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Hi Mahmut,
Still the same problem and a more worrying issue now - Taverna won't
start :( getting the following, so perhaps I should take it over to
taverna-users instead...
Exception occured in getInstance
java.lang.IllegalArgumentException: Host name may not be null
at org.apache.commons.httpclient.HttpHost.<init>(HttpHost.java:67)
at org.apache.commons.httpclient.HttpHost.<init>(HttpHost.java:106)
at
org.apache.commons.httpclient.HttpMethodBase.setURI(HttpMethodBase.java:276)
at
org.apache.commons.httpclient.HttpMethodBase.<init>(HttpMethodBase.java:217)
at
org.apache.commons.httpclient.methods.GetMethod.<init>(GetMethod.java:88)
at
net.sf.taverna.update.plugin.PluginManager.getPluginsFromSite(PluginManager.java:391)
at
net.sf.taverna.update.plugin.PluginManager.checkForUpdates(PluginManager.java:548)
at
net.sf.taverna.update.plugin.ui.UpdatesAvailableIcon.pluginUpdateAvailable(UpdatesAvailableIcon.java:151)
at
net.sf.taverna.update.plugin.ui.UpdatesAvailableIcon.checkForUpdates(UpdatesAvailableIcon.java:135)
at
net.sf.taverna.update.plugin.ui.UpdatesAvailableIcon.<init>(UpdatesAvailableIcon.java:80)
at
org.embl.ebi.escience.scuflui.workbench.Workbench.setUI(Workbench.java:336)
at
org.embl.ebi.escience.scuflui.workbench.Workbench.<init>(Workbench.java:201)
at
org.embl.ebi.escience.scuflui.workbench.Workbench.getInstance(Workbench.java:134)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
net.sf.taverna.tools.Bootstrap.invokeWorkbench(Bootstrap.java:192)
at net.sf.taverna.tools.Bootstrap.main(Bootstrap.java:75)
Mahmut Uludag wrote:
> Hi Sirisha,
>
>> after uninstalling and restarting Taverna, when I
>> add the plugin site (http://soaplab.sourceforge.net/taverna-plugin/) the
>> only available plugin version is 2.1.1.7-beta - should I go ahead with
>> that, or should it say the different version number?
>
> yes it should, looks like there is some caching? just to be make sure i
> now also deleted the plugin definition, last time i only delete it from
> the available plugins list (when testing here taverna didn't see it so i
> was reluctant to delete it completely, i don't know why taverna still
> sees it in your case). Can you please try again?
>
> Mahmut
>
>
This message has been checked for viruses but the contents of an attachment
may still contain software viruses, which could damage your computer system:
you are advised to perform your own checks. Email communications with the
University of Nottingham may be monitored as permitted by UK legislation.
|
|
From: Sirisha G. <si...@my...> - 2009-08-03 11:42:36
|
Hi Mahmut, Next frustrating problem!! I have tried again with Taverna 1.7.2 (was using 1.7.1) - when I add the plugin site it immediately shows the message "This plugin site contains no new plugins" - even though this is a fresh install of a new version! Bit of a loss as to what to do next :( Sirisha Mahmut Uludag wrote: > Hi Sirisha, > >> after uninstalling and restarting Taverna, when I >> add the plugin site (http://soaplab.sourceforge.net/taverna-plugin/) the >> only available plugin version is 2.1.1.7-beta - should I go ahead with >> that, or should it say the different version number? > > yes it should, looks like there is some caching? just to be make sure i > now also deleted the plugin definition, last time i only delete it from > the available plugins list (when testing here taverna didn't see it so i > was reluctant to delete it completely, i don't know why taverna still > sees it in your case). Can you please try again? > > Mahmut > > This message has been checked for viruses but the contents of an attachment may still contain software viruses, which could damage your computer system: you are advised to perform your own checks. Email communications with the University of Nottingham may be monitored as permitted by UK legislation. |
|
From: Mahmut U. <ul...@eb...> - 2009-08-03 14:15:55
|
Hi Sirisha, I will this afternoon work on updating the plugin for taverna-1.7.2, it has not been done yet. I hope to get it soon published. Mahmut > Next frustrating problem!! I have tried again with Taverna 1.7.2 (was > using 1.7.1) - when I add the plugin site it immediately shows the > message "This plugin site contains no new plugins" - even though this is > a fresh install of a new version! Bit of a loss as to what to do next :( |
|
From: Mahmut U. <ul...@eb...> - 2009-08-03 15:16:19
|
Hi Sirisha, > I have tried again with Taverna 1.7.2 (was > using 1.7.1) - when I add the plugin site it immediately shows the > message "This plugin site contains no new plugins" - even though this is > a fresh install of a new version! I have added a new plugin to usual taverna/soaplab plugin point for taverna-1.7.2, version number called 2.1.1.7-beta. I tested it both jax-ws and axis1 flavours of soaplab2 and it looks working. You should restart taverna after installing the plugin first time. Mahmut |
|
From: Sirisha G. <si...@my...> - 2009-08-04 08:46:01
|
Hi Mahmut -
Yesterday evening, I could not get Taverna v 1.7.2 to start at all.
Today it's starting up, but reporting the following error, so should I
try to uninstall and reinstall the plugin?
Aug 4, 2009 9:39:32 AM
net.sf.taverna.raven.repository.impl.LocalRepository ?
WARNING: Could not find artifact
org.soaplab.plugins.taverna:soaplab2-scavenger:2.1.1.7-beta
net.sf.taverna.raven.repository.ArtifactNotFoundException: Can't find
artifact for: org.soaplab.plugins.taverna:soaplab2-scavenger:2.1.1.7-beta
at
net.sf.taverna.raven.repository.impl.LocalRepository.fetch(LocalRepository.java:819)
at
net.sf.taverna.raven.repository.impl.LocalRepository.act(LocalRepository.java:536)
at
net.sf.taverna.raven.repository.impl.LocalRepository.update(LocalRepository.java:490)
at net.sf.taverna.raven.Loader.doRavenMagic(Loader.java:170)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
net.sf.taverna.tools.Bootstrap.createWorkbenchClass(Bootstrap.java:240)
at net.sf.taverna.tools.Bootstrap.main(Bootstrap.java:71)
Thanks,
Sirisha
Mahmut Uludag wrote:
> Hi Sirisha,
>
>> I have tried again with Taverna 1.7.2 (was
>> using 1.7.1) - when I add the plugin site it immediately shows the
>> message "This plugin site contains no new plugins" - even though this is
>> a fresh install of a new version!
>
> I have added a new plugin to usual taverna/soaplab plugin point for
> taverna-1.7.2, version number called 2.1.1.7-beta. I tested it both
> jax-ws and axis1 flavours of soaplab2 and it looks working. You should
> restart taverna after installing the plugin first time.
>
> Mahmut
>
>
This message has been checked for viruses but the contents of an attachment
may still contain software viruses, which could damage your computer system:
you are advised to perform your own checks. Email communications with the
University of Nottingham may be monitored as permitted by UK legislation.
|
|
From: Sirisha G. <si...@my...> - 2009-08-04 09:55:35
|
Hi again - seems the problem is resolved for 1.7.2 - I have uninstalled and reinstalled and the plugin appears to be working correctly. I still don't know what caused 1.7.1 to break so badly, but at least I can now access my Soaplab2 services :) Many thanks, Sirisha Mahmut Uludag wrote: > Hi Sirisha, > >> I have tried again with Taverna 1.7.2 (was >> using 1.7.1) - when I add the plugin site it immediately shows the >> message "This plugin site contains no new plugins" - even though this is >> a fresh install of a new version! > > I have added a new plugin to usual taverna/soaplab plugin point for > taverna-1.7.2, version number called 2.1.1.7-beta. I tested it both > jax-ws and axis1 flavours of soaplab2 and it looks working. You should > restart taverna after installing the plugin first time. > > Mahmut > > This message has been checked for viruses but the contents of an attachment may still contain software viruses, which could damage your computer system: you are advised to perform your own checks. Email communications with the University of Nottingham may be monitored as permitted by UK legislation. |
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