Re: [Soaplab-users] Multiple input files with filelist

[Andrew E. <a.e...@ci...>]

Hi Mahmut

Thanks for the reply.
Yes, in fact my problem was the missing :: on the command line and now it 
works.
(there was a memory problem when you tried on our server: I dont know why, 
but we are changing servers soon so I wont investigate).

Final question, do you know if it is possible in Taverna to execute a 
soaplab web service with the file list ?

many thanks
Andrew


At 11:28 AM 8/8/2006, you wrote:
>Hi Andrew,
>
>An example command line to supply list of files should look like as
>follows.
>
>run/run-analysis -e http://vega.cineca.it:8082/axis/services -name
>classic.listfile list ::files.txt -w -r
>
>In the above example the files.txt file contains the names of the input
>files, each file name being on a separate line. Please note the '::'
>characters before the file name, the client program use this prefix to
>distinguish the filelist options from ordinary options.
>
>The filelist option seems working fine in my local soaplab server.
>
>When I submit the above example command to your server I receive an
>"Internal Server Error". Can you please check the error message in your
>tomcat log files?
>
>Thanks,
>Mahmut
>
>
>On Fri, 2006-07-28 at 12:22 +0200, Andrew Emerson wrote:
> > Dear All
> >
> > Sorry for the repost but I am still having problems passing an
> > unknown/unspecified number of input files to soaplab using the filelist
> > data type as described in the Soaplab FAQ.
> >
> > Here is the error I get when using the run/run-analysis soap client:
> >
> > run/run-analysis -e http://vega.cineca.it:8082/axis/services -name
> > classic.listfile \
> > list file1 file2 file3 \
> > -w -r
> >
> > embl.ebi.utils.GException: ===ERROR===
> > Fault details:
> > [stackTrace: null]
> > [hostname: null]
> > Fault string: org.embl.ebi.SoaplabShare.SoaplabException:
> > CONFLICTING_INPUT. list * (Parameter :  (CORBA related problem) Unknown
> > TypeCode kind)
> >
> > Fault 
> code:   {http://schemas.xmlsoap.org/soap/envelope/}Server.userException
> > Fault actor:  null
> > When calling:
> >          http://vega.cineca.it:8082/axis/services/classic.listfile
> >          createAndRun
> > ===========
> >
> >
> > My ACD file looks like this:
> >
> > appl: ListTest [
> >    documentation: "File input test"
> >    groups: "Classic"
> >    nonemboss: "Y"
> >    executable: "listfile.pl"
> > ]
> >
> > filelist: list [
> >     additional:"Y"
> >     qualifier: "list"
> > ]
> >
> > outfile: output  [
> >    additional: "Y"
> >    default: "stdout"
> > ]
> >
> > (My application merely prints out the contents of the file passed to it).
> >
> > I must be doing something stupid but I can't see it.
> > Any help appreciated
> >
> > best wishes
> > Andy Emerson
> >
> >
> > ------------------------
> > Dr Andrew Emerson
> > CINECA (High Performance Systems)
> > via Magnanelli, 6/3
> > 40033 Casalecchio di Reno (BO)-ITALY
> > tel: +39-051-6171653, fax: +39-051-6132198
> > e-mail: a.e...@ci...
> >
> >
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------------------------
Dr Andrew Emerson
CINECA (High Performance Systems)
via Magnanelli, 6/3
40033 Casalecchio di Reno (BO)-ITALY
tel: +39-051-6171653, fax: +39-051-6132198
e-mail: a.e...@ci...