Re: [Soaplab-users] Multiple input files with filelist

[Mahmut U. <ul...@eb...>]

Hi Andrew,

Glad that the modification works. I'm now sending this message to Tom as
well. I hope Tom would update the related file.

Meantime, I have been looking at memory leaks in Applab/Soaplab servers
and finally had very encouraging results yesterday on Applab servers. I
continue working on it to further reduce the leaks.

Regards,
Mahmut


On Thu, 2006-08-31 at 12:04 +0200, Andrew Emerson wrote:
> Hi Mahmut
> 
> Looks like the modification to taverna works!
> Many thanks. What are the chances of convincing the Taverna developers to 
> include the changes in the next release of Taverna?
> 
> thanks again
> Andrew
> 
> 
> 
> At 03:40 PM 8/29/2006, you wrote:
> >Hi Andrew,
> >
> > > Yes, in fact my problem was the missing :: on the command line and now it
> > > works.
> > > Final question, do you know if it is possible in Taverna to execute a
> > > soaplab web service with the file list ?
> >
> >No, but it seems that having the following additional lines in
> >SoaplabTask.java at line 82 fixes the problem.
> >
> >   if (parameterValue instanceof ArrayList){
> >     ArrayList v = (ArrayList)parameterValue;
> >     byte[][] realValue = new byte [v.size()][];
> >     parameterValue = v.toArray(realValue);
> >   }
> >
> >Taverna doesn't have the notion of a special file that includes a list
> >of input file names, similar to what we have in Soaplab AnalysisClient.
> >In taverna, however we need to specify each input file individually. You
> >can do this in the 'Run Workflow' window by first selecting 'New List'
> >rather than 'New Input' then you need to load each file by selecting
> >'New Input' and then 'Load'.
> >
> >Regards,
> >Mahmut
> 
> ------------------------
> Dr Andrew Emerson
> CINECA (High Performance Systems)
> via Magnanelli, 6/3
> 40033 Casalecchio di Reno (BO)-ITALY
> tel: +39-051-6171653, fax: +39-051-6132198
> e-mail: a.e...@ci... 
>