Re: [Soaplab-users] Multiple input files with filelist

[Mahmut U. <ul...@eb...>]

Hi Andrew,

An example command line to supply list of files should look like as
follows.

run/run-analysis -e http://vega.cineca.it:8082/axis/services -name
classic.listfile list ::files.txt -w -r

In the above example the files.txt file contains the names of the input
files, each file name being on a separate line. Please note the '::'
characters before the file name, the client program use this prefix to
distinguish the filelist options from ordinary options.

The filelist option seems working fine in my local soaplab server.

When I submit the above example command to your server I receive an 
"Internal Server Error". Can you please check the error message in your
tomcat log files?

Thanks,
Mahmut


On Fri, 2006-07-28 at 12:22 +0200, Andrew Emerson wrote: 
> Dear All
> 
> Sorry for the repost but I am still having problems passing an 
> unknown/unspecified number of input files to soaplab using the filelist 
> data type as described in the Soaplab FAQ.
> 
> Here is the error I get when using the run/run-analysis soap client:
> 
> run/run-analysis -e http://vega.cineca.it:8082/axis/services -name 
> classic.listfile \
> list file1 file2 file3 \
> -w -r
> 
> embl.ebi.utils.GException: ===ERROR===
> Fault details:
> [stackTrace: null]
> [hostname: null]
> Fault string: org.embl.ebi.SoaplabShare.SoaplabException: 
> CONFLICTING_INPUT. list * (Parameter :  (CORBA related problem) Unknown 
> TypeCode kind)
> 
> Fault code:   {http://schemas.xmlsoap.org/soap/envelope/}Server.userException
> Fault actor:  null
> When calling:
>          http://vega.cineca.it:8082/axis/services/classic.listfile
>          createAndRun
> ===========
> 
> 
> My ACD file looks like this:
> 
> appl: ListTest [
>    documentation: "File input test"
>    groups: "Classic"
>    nonemboss: "Y"
>    executable: "listfile.pl"
> ]
> 
> filelist: list [
>     additional:"Y"
>     qualifier: "list"
> ]
> 
> outfile: output  [
>    additional: "Y"
>    default: "stdout"
> ]
> 
> (My application merely prints out the contents of the file passed to it).
> 
> I must be doing something stupid but I can't see it.
> Any help appreciated
> 
> best wishes
> Andy Emerson
> 
> 
> ------------------------
> Dr Andrew Emerson
> CINECA (High Performance Systems)
> via Magnanelli, 6/3
> 40033 Casalecchio di Reno (BO)-ITALY
> tel: +39-051-6171653, fax: +39-051-6132198
> e-mail: a.e...@ci...  
> 
> 
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