[Soaplab-users] Output Formats

[Tim T. <Tim...@ed...>]

Hi,

When running EMBOSS tools  directly from the command-line I can in  
many cases specify the output format via the -rformat2 or osformat2  
switch.

However I notice that I cannot specify the output format for many of  
the EMBOSS services wrapped by Soaplab. In particular I am intersted  
in having fuzznuc output GFF format files instead of the default  
seqtable format.

Is there anyway to achieve this?

I am co-ordinating the execution of these Soaplab services through  
Taverna and no input is specified for output format in many cases.

Thanks, Tim