RE: [Soaplab-users] Embossdata soaplab service

[Marc L. <Mar...@DE...>]

> But I am afraid I bumped into another 'problem'. I used a=20
> workaround to get to the content of Cut.index. I just copied=20
> it to the web folder so that is fetched by taverna using that=20
> url. OK so far so good, the user can select a codon table and=20
> the resulting string like "Ebacst.cut" is passed to the next=20
> processor. The string value is passed to the cfile_url port=20
> of backtranseq. Unfortunately the execution fails because the=20
> Eacc.cut file can not be found.
> The issue becomes clear when you look at the report and more=20
> precisely at the -cfile argument:
>=20
> Report:
> Name: backtranseq
> Started: 05-09-26 15:48:09
> Program and parameters:
> backtranseq
> /transfer/results/soaplab/unknown/Projects/default/Data/in1127
> 742489009
> /transfer/results/soaplab/unknown/Projects/default/Data/out112
> 7742489011
> -cfile
> /transfer/results/soaplab/unknown/Projects/default/Data/Ebacst.cut
> --- end of parameters
>=20
> As you can see it is not the string "Ebacst.cut" that is=20
> passed as an argument but actually=20
> "/transfer/results/soaplab/unknown/Projects/default/Data/Ebacs
> t.cut", which does not exist. I expected the first behaviour=20
> not the latter. Or am I using it the wrong way ?

I probably did. Just found out you have to give file:Ebacst.cut to the
cfile_url option.
Cheers,
Marc