RE: [Soaplab-users] Embossdata soaplab service
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From: Marc L. <Mar...@DE...> - 2005-09-27 11:03:18
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> But I am afraid I bumped into another 'problem'. I used a=20 > workaround to get to the content of Cut.index. I just copied=20 > it to the web folder so that is fetched by taverna using that=20 > url. OK so far so good, the user can select a codon table and=20 > the resulting string like "Ebacst.cut" is passed to the next=20 > processor. The string value is passed to the cfile_url port=20 > of backtranseq. Unfortunately the execution fails because the=20 > Eacc.cut file can not be found. > The issue becomes clear when you look at the report and more=20 > precisely at the -cfile argument: >=20 > Report: > Name: backtranseq > Started: 05-09-26 15:48:09 > Program and parameters: > backtranseq > /transfer/results/soaplab/unknown/Projects/default/Data/in1127 > 742489009 > /transfer/results/soaplab/unknown/Projects/default/Data/out112 > 7742489011 > -cfile > /transfer/results/soaplab/unknown/Projects/default/Data/Ebacst.cut > --- end of parameters >=20 > As you can see it is not the string "Ebacst.cut" that is=20 > passed as an argument but actually=20 > "/transfer/results/soaplab/unknown/Projects/default/Data/Ebacs > t.cut", which does not exist. I expected the first behaviour=20 > not the latter. Or am I using it the wrong way ? I probably did. Just found out you have to give file:Ebacst.cut to the cfile_url option. Cheers, Marc |