RE: [Soaplab-users] Embossdata soaplab service

[Martin S. <se...@eb...>]

Peter,
   How does embossdata work? A user wants to use it ith soaplab and
taverna - and it just reports "files was succesfully copied". Is there a
way how to get data really back, or they are just copied to a directory? 
   I must admit that I have never used this program over Soaplab. Perhaps
it requires some changes in Soaplab launcher (to fetch data from the place
where embossdata copies it).

   Thanks,
   Martin

Marc,
   I am today (and part of the tomorrow) on email but then I will
travelling to Europe and I am not sure how often I will be able to read
emails. So bear please with me if I am delayed.

   Regards,
   Martin

> 
> > -----Original Message-----
> > From: Martin Senger [mailto:se...@eb...] 
> > Sent: Monday, September 26, 2005 2:38 PM
> > To: Marc Logghe
> > Cc: soa...@li...
> > Subject: Re: [Soaplab-users] Embossdata soaplab service
> > 
> > > When you look at the metadata for the embossdata soaplab 
> > service you 
> > > have the possibility to fetch a data file like e.g. 'Cut.index'.
> > > However, it is not clear to me how to get to the content of 
> > that file 
> > > when you invoke that service within e.g. taverna.
> > >
> >    What program is going to need (to consume) this data? An 
> > Emboss program? Like another program accessed by Soaplab web srevice?
> 
> Hi Martin,
> The purpose is to send the content of Cut.index (a 2 column list of
> codon table ids and the corresponding description) to a beanshell script
> in Taverna that turns this into a dropdown list. In that way a user
> could make a choice based on the description, while the actual value
> send to the server is the codon table name.
> Cheers and tnx for the prompt reaction,
> Marc
> 
> 
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-- 
Martin Senger
   email: mar...@gm...
   skype: martinsenger
consulting for:
   International Rice Research Institute
   Biometrics and Bioinformatics Unit
   DAPO BOX 7777, Metro Manila
   Philippines, phone: +63-2-580-5600 (ext.2324)