Re: [Soaplab-users] spinet and EMBOSS

[cajela <ca...@gm...>]

Hi all,

Typically for me, I ask a question just before being off line for a
while - this time it was easter holidays, and transferring over to a
new computer... Sorry, Mahmut, your help really is appreciated,
despite my delay in thanking you. It was indeed the right answer.

But that raises one further question for me. Why did my rebuild of
soaplab not result in that properties file being automatically
regenerated correctly? I did make the changes in my soaplab home
directory, but install doesn't seem to have copied them to the tomcat
version. Looks like the war file was rebuilt, but not the whole thing.
I must have misread the install doco; can anyone explain where to look
for what I need to do to add services to an existing installation?

thanks
Cath



On 18/03/2008, Mahmut Uludag <ul...@eb...> wrote:
>  > I've just tried to install EMBOSS on soaplab2, and it seems sorta
>  > kinda successful - the EMBOSS services show up in the info-list, and
>  > they seem to have deployed OK when you look at the list at
>  > http://myserver.myuni.au:8888/soaplab2-axis/services
>  > (not real URL)
>  >
>  > However, entering that same URL in a taverna session as a new soaplab
>  > scavenger returns only the original default soaplab list. And the
>  > spinet web page doesn't have them, either. What have I missed? I guess
>  > it must be some config somewhere that I overlooked.
>  >
>  > How can I make taverna see these, and spinet regenerate itself? Spinet
>  > looks like a nifty little testing page, by the way, and I'd like to
>  > use it.
>
>
> >From your description it seems that the services are recognised by Axis
>  but not Soaplab. This should be related to a missing or wrong 'applist'
>  property line in your soaplab.properties file (under your
>  WEB-INF/classes directory of your soaplab2-axis web application). You
>  should have a property definition similar to the following.
>
>     applist = ${metadata.dir}/EMBOSSApplications.xml
>
>  Make sure that you have ${metadata.dir} defined correctly above in your
>  properties file. It should normally point to the metadata directory of
>  your soaplab2-axis web application.
>
>  Regards,
>
> Mahmut
>
>
>


-- 
Cath Lawrence    ---  cajela at gmail dot com
http://thecanberracook.blogspot.com