SOAPfuse Wiki
a tool for identifying fusion transcripts from paired-end RNA-Seq data
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Publication
SOAPfuse has been published as Method article in Genome Biology.
- Jia W, Qiu K, He M, Song P, Zhou Q, Zhou F, Yu Y, Zhu D, Nickerson ML, Wan S, Liao X, Zhu X, Peng S, Li Y, Wang J, Guo G: SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data. Genome biology 2013, 14:R12.
Several researches have applied SOAPfuse, there is a part list of them.
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Guo, G., et al. (2013). "Whole-genome and whole-exome sequencing of bladder cancer identifies frequent alterations in genes involved in sister chromatid cohesion and segregation." Nature genetics 45(12): 1459-1463.
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Qin, F., et al. (2015). "Discovery of CTCF-Sensitive Cis-Spliced Fusion RNAs between Adjacent Genes in Human Prostate Cells." PLoS Genet 11(2): e1005001.
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Georgiou, Konstantinos, et al. (2016). "Genetic basis of PD-L1 overexpression in diffuse large B-cell lymphomas." Blood 127.24 (2016): 3026-3034.